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TAB2
HPA
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  • SUMMARY

  • TISSUE

  • BRAIN

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  • TAB2
TISSUE PRIMARY DATA URINARY BLADDER Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Urinary bladder
Tissue proteome
Tissue methods
URINARY BLADDER - Expression summary
Protein expression
Urinary bladderi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Urothelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:38.1 nTPM
HPA:38.1 nTPM
GTEx:27.7 nTPM
FANTOM5:78.7 Scaled Tags Per Million
URINARY BLADDER - SINGLE CELL RNA EXPRESSION
Explore single cell type data

URINARY BLADDER - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA065436Antibody HPA070137
Urothelial cells MediumMedium





URINARY BLADDER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

38.1
overview
Male, age 74
Urinary bladder sample 264
nTPM: 35.1
Cell types%
Urothelial cells:
5

Smooth muscle cells:
60

Fibroblasts:
20

Endothelial cells:
10

Other cell types:
5

overview
Male, age 80
Urinary bladder sample 265
nTPM: 30.6
Cell types%
Urothelial cells:
10

Smooth muscle cells:
45

Fibroblasts:
15

Endothelial cells:
10

Other cell types:
20

N/A
Female, age 0.1
Urinary bladder sample 1597
nTPM: 42.5
N/A
Female, age 0.1
Urinary bladder sample 1598
nTPM: 44.1

URINARY BLADDER - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.7
GTEx sample id Sample description nTPM
Bladder
Average nTPM: 27.7
Samples: 77

Max nTPM: 50.1
Min nTPM: 16.2
Std nTPM: 7.5
Median nTPM: 26.4
GTEX-P4QS-1926-SM-GQ1BY 60-69 years, male 50.1
GTEX-OOBJ-1926-SM-GRR1P 60-69 years, male 45.7
GTEX-TKQ2-0526-SM-GRR15 50-59 years, male 45.0
GTEX-SE5C-1026-SM-4BRUG 40-49 years, female 42.8
GTEX-T5JC-1126-SM-GPIA1 20-29 years, male 42.8
GTEX-TMMY-1526-SM-4DXST 40-49 years, female 42.6
GTEX-S4P3-0826-SM-H7OF3 50-59 years, female 41.4
GTEX-SUCS-1226-SM-GPI9A 70-79 years, male 38.9
GTEX-OHPK-1926-SM-H7OF2 50-59 years, female 37.3
GTEX-QDVJ-1526-SM-GPI84 50-59 years, male 37.2
GTEX-T2IS-2526-SM-GRR23 20-29 years, female 37.1
GTEX-OIZF-1926-SM-7PBZS 60-69 years, male 35.9
GTEX-QEL4-1826-SM-EZ6KU 50-59 years, male 34.4
GTEX-OXRK-1926-SM-GRR1N 50-59 years, female 34.3
GTEX-NPJ8-1126-SM-GNTAI 40-49 years, male 34.2
GTEX-PLZ6-1026-SM-GQ1C8 30-39 years, male 33.7
GTEX-RWS6-1426-SM-GPRWQ 60-69 years, female 33.2
GTEX-Q734-1226-SM-GRR21 40-49 years, female 33.1
GTEX-R55C-1226-SM-GOQY7 40-49 years, male 33.1
GTEX-PLZ5-1326-SM-GQ1C2 50-59 years, male 32.0
GTEX-OHPM-1926-SM-H7OG1 50-59 years, male 30.6
GTEX-Q2AH-1326-SM-GPRWF 40-49 years, male 30.3
GTEX-U3ZM-0826-SM-4DXU6 40-49 years, male 30.2
GTEX-QV31-0926-SM-GQ1C6 30-39 years, male 29.6
GTEX-S32W-1126-SM-4AD5V 50-59 years, female 29.6
GTEX-U4B1-1226-SM-4DXT7 40-49 years, male 29.4
GTEX-P78B-2126-SM-GQ1C3 40-49 years, female 29.1
GTEX-PW2O-1026-SM-GPRWA 20-29 years, male 28.9
GTEX-S95S-0626-SM-EZ6L8 60-69 years, male 28.9
GTEX-P4PQ-1926-SM-GRR14 60-69 years, male 28.3
GTEX-R45C-2426-SM-HL11G 60-69 years, female 28.0
GTEX-QV44-1426-SM-GPI8D 50-59 years, male 27.7
GTEX-OIZH-1926-SM-GPRXO 50-59 years, male 27.2
GTEX-R55G-1326-SM-HAUYU 40-49 years, female 27.2
GTEX-REY6-2026-SM-GPRYL 60-69 years, male 27.2
GTEX-S4Q7-0926-SM-4AD5D 20-29 years, male 27.1
GTEX-SNOS-0526-SM-4DM54 40-49 years, male 26.9
GTEX-QDT8-2826-SM-GOQYY 30-39 years, female 26.8
GTEX-OHPL-1926-SM-HAV18 60-69 years, female 26.4
GTEX-QMRM-1326-SM-HAUYS 50-59 years, male 26.3
GTEX-RM2N-1026-SM-GOQY8 50-59 years, male 26.1
GTEX-P44H-2226-SM-E9U4P 40-49 years, male 26.0
GTEX-QEG5-2326-SM-GRR2Z 20-29 years, male 25.5
GTEX-PX3G-1926-SM-GQ1ED 20-29 years, female 25.1
GTEX-RWSA-2126-SM-H7OG7 40-49 years, male 25.1
GTEX-P4PP-1926-SM-HAUZM 30-39 years, female 24.9
GTEX-S3XE-1226-SM-4AD4L 50-59 years, male 24.6
GTEX-R53T-1426-SM-H7OG3 50-59 years, female 24.3
GTEX-T6MO-0926-SM-GPRWN 40-49 years, female 24.3
GTEX-OIZI-1926-SM-H7OGY 40-49 years, male 23.5
GTEX-QLQ7-1226-SM-GOQYE 60-69 years, male 23.5
GTEX-POMQ-0926-SM-H6Q6H 20-29 years, female 23.4
GTEX-PWN1-1926-SM-HAUZN 40-49 years, female 23.3
GTEX-RNOR-2126-SM-EXURR 50-59 years, female 23.2
GTEX-P4QT-1926-SM-HAUYQ 50-59 years, female 22.9
GTEX-N7MT-1826-SM-GQ1C9 60-69 years, female 22.8
GTEX-PWCY-1126-SM-H7OGX 20-29 years, female 22.6
GTEX-QLQW-0826-SM-H7OG2 30-39 years, male 22.4
GTEX-Q2AI-1026-SM-GRR3I 40-49 years, male 22.3
GTEX-O5YT-1926-SM-H6Q82 20-29 years, male 21.3
GTEX-OOBK-1926-SM-HAUZL 40-49 years, male 21.3
GTEX-T6MN-2226-SM-EVYAM 50-59 years, male 21.3
GTEX-RUSQ-1326-SM-GQ1EA 50-59 years, male 20.7
GTEX-QCQG-0826-SM-GPI8H 50-59 years, female 20.5
GTEX-RN64-2426-SM-EZ6L2 50-59 years, male 20.2
GTEX-U3ZN-1226-SM-4DXUD 30-39 years, female 20.2
GTEX-S33H-1926-SM-EYYVH 30-39 years, male 19.7
GTEX-T5JW-1026-SM-EZ6LR 20-29 years, female 19.7
GTEX-U3ZH-0826-SM-H6Q7I 30-39 years, male 19.6
GTEX-SNMC-0826-SM-4DM66 20-29 years, male 19.2
GTEX-QDVN-1426-SM-GPRWL 50-59 years, male 19.0
GTEX-S4UY-0926-SM-4AD6O 40-49 years, female 18.9
GTEX-QXCU-2226-SM-GPI87 50-59 years, male 18.8
GTEX-N7MS-2126-SM-GRR2X 60-69 years, male 18.4
GTEX-T8EM-1726-SM-GPRWO 40-49 years, male 18.2
GTEX-QEG4-2126-SM-GQ1CE 30-39 years, male 16.3
GTEX-S7SF-1126-SM-GQ1CH 20-29 years, female 16.2
Show allShow less

URINARY BLADDER - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

78.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Bladder
Scaled Tags Per Million: 78.7
FF:10011-101C2 55,58,79 years, mixed 78.7

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