A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.0
nTPM
Monaco:
32.3
nTPM
Schmiedel:
41.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.0
HPA sample
nTPM
Classical monocyte nTPM: 3.1
Samples: 6
Max nTPM: 3.8
Min nTPM: 2.7
P10809_1003
2.9
P10809_1020
3.0
P10809_1039
2.9
P10809_1058
3.8
P10809_1080
2.7
P10809_1107
3.2
Intermediate monocyte nTPM: 4.0
Samples: 6
Max nTPM: 5.5
Min nTPM: 2.4
P10809_1004
2.4
P10809_1023
5.5
P10809_1042
4.6
P10809_1061
2.8
P10809_1081
5.3
P10809_1108
3.6
Non-classical monocyte nTPM: 2.6
Samples: 5
Max nTPM: 3.7
Min nTPM: 1.3
P10809_1005
3.7
P10809_1053
1.3
P10809_1072
2.4
P10809_1082
2.5
P10809_1109
3.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.3
Monaco sample
nTPM
Classical monocyte nTPM: 29.4
Samples: 4
Max nTPM: 34.3
Min nTPM: 24.5
RHH5313_R3680
34.3
RHH5221_R3593
24.5
RHH5250_R3622
33.0
RHH5279_R3651
25.7
Intermediate monocyte nTPM: 32.4
Samples: 4
Max nTPM: 43.1
Min nTPM: 26.0
RHH5314_R3681
26.0
RHH5222_R3594
31.8
RHH5251_R3623
43.1
RHH5280_R3652
28.5
Non-classical monocyte nTPM: 29.7
Samples: 4
Max nTPM: 34.4
Min nTPM: 22.5
RHH5315_R3682
22.5
RHH5223_R3595
32.4
RHH5252_R3624
29.6
RHH5281_R3653
34.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.0
Schmiedel sample id
TPM
Classical monocyte TPM: 41.0
Samples: 91
Max TPM: 82.4
Min TPM: 19.8
MONOCYTES_1
82.4
MONOCYTES_2
72.3
MONOCYTES_3
68.3
MONOCYTES_4
67.1
MONOCYTES_5
61.0
MONOCYTES_6
59.1
MONOCYTES_7
58.1
MONOCYTES_8
57.1
MONOCYTES_9
55.3
MONOCYTES_10
55.2
MONOCYTES_11
54.8
MONOCYTES_12
54.6
MONOCYTES_13
54.3
MONOCYTES_14
54.2
MONOCYTES_15
52.7
MONOCYTES_16
51.2
MONOCYTES_17
51.0
MONOCYTES_18
50.0
MONOCYTES_19
49.5
MONOCYTES_20
49.4
MONOCYTES_21
49.1
MONOCYTES_22
48.9
MONOCYTES_23
48.6
MONOCYTES_24
48.4
MONOCYTES_25
47.7
MONOCYTES_26
47.3
MONOCYTES_27
46.7
MONOCYTES_28
45.4
MONOCYTES_29
45.2
MONOCYTES_30
45.2
MONOCYTES_31
43.8
MONOCYTES_32
43.2
MONOCYTES_33
43.1
MONOCYTES_34
42.9
MONOCYTES_35
41.9
MONOCYTES_36
41.9
MONOCYTES_37
41.7
MONOCYTES_38
41.4
MONOCYTES_39
41.1
MONOCYTES_40
40.9
MONOCYTES_41
40.5
MONOCYTES_42
40.3
MONOCYTES_43
40.2
MONOCYTES_44
40.0
MONOCYTES_45
39.5
MONOCYTES_46
39.1
MONOCYTES_47
39.1
MONOCYTES_48
38.7
MONOCYTES_49
38.4
MONOCYTES_50
38.3
MONOCYTES_51
38.2
MONOCYTES_52
38.0
MONOCYTES_53
37.9
MONOCYTES_54
37.8
MONOCYTES_55
37.2
MONOCYTES_56
37.1
MONOCYTES_57
36.7
MONOCYTES_58
35.9
MONOCYTES_59
35.8
MONOCYTES_60
35.7
MONOCYTES_61
35.6
MONOCYTES_62
35.2
MONOCYTES_63
35.2
MONOCYTES_64
35.1
MONOCYTES_65
34.3
MONOCYTES_66
34.2
MONOCYTES_67
34.0
MONOCYTES_68
33.9
MONOCYTES_69
33.9
MONOCYTES_70
33.1
MONOCYTES_71
32.1
MONOCYTES_72
31.9
MONOCYTES_73
31.3
MONOCYTES_74
31.2
MONOCYTES_75
30.4
MONOCYTES_76
29.9
MONOCYTES_77
29.3
MONOCYTES_78
28.9
MONOCYTES_79
28.5
MONOCYTES_80
27.2
MONOCYTES_81
27.2
MONOCYTES_82
27.1
MONOCYTES_83
26.8
MONOCYTES_84
26.7
MONOCYTES_85
24.9
MONOCYTES_86
24.3
MONOCYTES_87
24.3
MONOCYTES_88
24.0
MONOCYTES_89
21.9
MONOCYTES_90
21.6
MONOCYTES_91
19.8
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Non-classical monocyte TPM: 21.3
Samples: 90
Max TPM: 36.5
Min TPM: 12.6
M2_1
36.5
M2_2
32.3
M2_3
32.3
M2_4
31.4
M2_5
29.1
M2_6
28.8
M2_7
28.7
M2_8
25.8
M2_9
25.8
M2_10
25.8
M2_11
25.4
M2_12
25.2
M2_13
25.0
M2_14
25.0
M2_15
24.2
M2_16
24.1
M2_17
24.1
M2_18
24.1
M2_19
24.1
M2_20
24.1
M2_21
24.0
M2_22
23.9
M2_23
23.9
M2_24
23.9
M2_25
23.8
M2_26
23.8
M2_27
23.7
M2_28
23.7
M2_29
23.5
M2_30
23.5
M2_31
23.4
M2_32
23.4
M2_33
23.2
M2_34
23.1
M2_35
23.0
M2_36
22.8
M2_37
22.6
M2_38
22.4
M2_39
22.1
M2_40
21.9
M2_41
21.8
M2_42
21.7
M2_43
21.6
M2_44
21.5
M2_45
21.5
M2_46
21.1
M2_47
21.1
M2_48
21.0
M2_49
20.8
M2_50
20.8
M2_51
20.8
M2_52
20.6
M2_53
20.4
M2_54
19.6
M2_55
19.6
M2_56
19.5
M2_57
19.5
M2_58
19.5
M2_59
19.4
M2_60
19.2
M2_61
18.9
M2_62
18.8
M2_63
18.8
M2_64
18.7
M2_65
18.7
M2_66
18.1
M2_67
18.0
M2_68
17.8
M2_69
17.7
M2_70
17.6
M2_71
17.6
M2_72
17.5
M2_73
17.4
M2_74
17.4
M2_75
17.3
M2_76
17.1
M2_77
17.1
M2_78
16.9
M2_79
16.8
M2_80
16.2
M2_81
16.2
M2_82
16.0
M2_83
15.6
M2_84
15.3
M2_85
15.2
M2_86
15.1
M2_87
14.4
M2_88
14.1
M2_89
13.1
M2_90
12.6
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