A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
62.3
nTPM
Monaco:
55.8
nTPM
Schmiedel:
14.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.3
HPA sample
nTPM
Classical monocyte nTPM: 62.3
Samples: 6
Max nTPM: 75.8
Min nTPM: 45.4
P10809_1003
75.8
P10809_1020
59.3
P10809_1039
60.1
P10809_1058
45.4
P10809_1080
62.9
P10809_1107
70.4
Intermediate monocyte nTPM: 58.8
Samples: 6
Max nTPM: 77.6
Min nTPM: 42.6
P10809_1004
55.4
P10809_1023
59.7
P10809_1042
62.7
P10809_1061
42.6
P10809_1081
54.9
P10809_1108
77.6
Non-classical monocyte nTPM: 59.0
Samples: 5
Max nTPM: 70.6
Min nTPM: 45.3
P10809_1005
70.6
P10809_1053
63.4
P10809_1072
45.3
P10809_1082
46.0
P10809_1109
69.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.8
Monaco sample
nTPM
Classical monocyte nTPM: 55.9
Samples: 4
Max nTPM: 68.9
Min nTPM: 31.2
RHH5313_R3680
68.9
RHH5221_R3593
31.2
RHH5250_R3622
62.3
RHH5279_R3651
61.0
Intermediate monocyte nTPM: 51.6
Samples: 4
Max nTPM: 73.1
Min nTPM: 41.2
RHH5314_R3681
73.1
RHH5222_R3594
48.0
RHH5251_R3623
44.0
RHH5280_R3652
41.2
Non-classical monocyte nTPM: 40.4
Samples: 4
Max nTPM: 48.7
Min nTPM: 31.0
RHH5315_R3682
48.7
RHH5223_R3595
31.0
RHH5252_R3624
33.6
RHH5281_R3653
48.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.7
Schmiedel sample id
TPM
Classical monocyte TPM: 14.7
Samples: 91
Max TPM: 20.3
Min TPM: 10.6
MONOCYTES_1
20.3
MONOCYTES_2
20.2
MONOCYTES_3
18.8
MONOCYTES_4
18.8
MONOCYTES_5
18.5
MONOCYTES_6
18.5
MONOCYTES_7
18.5
MONOCYTES_8
18.2
MONOCYTES_9
18.1
MONOCYTES_10
17.9
MONOCYTES_11
17.9
MONOCYTES_12
17.8
MONOCYTES_13
17.6
MONOCYTES_14
17.5
MONOCYTES_15
17.4
MONOCYTES_16
17.4
MONOCYTES_17
17.3
MONOCYTES_18
17.3
MONOCYTES_19
17.3
MONOCYTES_20
17.2
MONOCYTES_21
16.8
MONOCYTES_22
16.7
MONOCYTES_23
16.6
MONOCYTES_24
16.3
MONOCYTES_25
16.2
MONOCYTES_26
16.1
MONOCYTES_27
16.1
MONOCYTES_28
16.0
MONOCYTES_29
15.6
MONOCYTES_30
15.5
MONOCYTES_31
15.4
MONOCYTES_32
15.4
MONOCYTES_33
15.4
MONOCYTES_34
15.4
MONOCYTES_35
15.3
MONOCYTES_36
15.2
MONOCYTES_37
15.2
MONOCYTES_38
15.2
MONOCYTES_39
15.1
MONOCYTES_40
15.1
MONOCYTES_41
15.1
MONOCYTES_42
14.9
MONOCYTES_43
14.9
MONOCYTES_44
14.9
MONOCYTES_45
14.8
MONOCYTES_46
14.8
MONOCYTES_47
14.7
MONOCYTES_48
14.6
MONOCYTES_49
14.5
MONOCYTES_50
14.5
MONOCYTES_51
14.4
MONOCYTES_52
14.4
MONOCYTES_53
14.4
MONOCYTES_54
14.3
MONOCYTES_55
14.2
MONOCYTES_56
14.1
MONOCYTES_57
14.0
MONOCYTES_58
14.0
MONOCYTES_59
13.9
MONOCYTES_60
13.6
MONOCYTES_61
13.6
MONOCYTES_62
13.6
MONOCYTES_63
13.6
MONOCYTES_64
13.4
MONOCYTES_65
13.3
MONOCYTES_66
13.3
MONOCYTES_67
13.2
MONOCYTES_68
13.2
MONOCYTES_69
13.0
MONOCYTES_70
12.9
MONOCYTES_71
12.7
MONOCYTES_72
12.4
MONOCYTES_73
12.4
MONOCYTES_74
12.1
MONOCYTES_75
12.1
MONOCYTES_76
12.1
MONOCYTES_77
12.0
MONOCYTES_78
11.8
MONOCYTES_79
11.7
MONOCYTES_80
11.7
MONOCYTES_81
11.6
MONOCYTES_82
11.5
MONOCYTES_83
11.4
MONOCYTES_84
11.1
MONOCYTES_85
11.1
MONOCYTES_86
11.0
MONOCYTES_87
10.9
MONOCYTES_88
10.9
MONOCYTES_89
10.9
MONOCYTES_90
10.6
MONOCYTES_91
10.6
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Non-classical monocyte TPM: 13.2
Samples: 90
Max TPM: 18.5
Min TPM: 8.9
M2_1
18.5
M2_2
17.8
M2_3
17.8
M2_4
17.7
M2_5
17.4
M2_6
17.4
M2_7
17.2
M2_8
16.8
M2_9
16.1
M2_10
16.1
M2_11
15.9
M2_12
15.8
M2_13
15.8
M2_14
15.7
M2_15
15.5
M2_16
15.4
M2_17
15.4
M2_18
15.2
M2_19
15.2
M2_20
15.1
M2_21
15.0
M2_22
15.0
M2_23
14.9
M2_24
14.9
M2_25
14.9
M2_26
14.6
M2_27
14.6
M2_28
14.5
M2_29
14.4
M2_30
14.3
M2_31
14.3
M2_32
13.8
M2_33
13.7
M2_34
13.7
M2_35
13.7
M2_36
13.7
M2_37
13.5
M2_38
13.5
M2_39
13.4
M2_40
13.4
M2_41
13.3
M2_42
13.3
M2_43
13.3
M2_44
13.3
M2_45
13.2
M2_46
13.1
M2_47
13.0
M2_48
13.0
M2_49
13.0
M2_50
13.0
M2_51
12.9
M2_52
12.9
M2_53
12.8
M2_54
12.7
M2_55
12.7
M2_56
12.5
M2_57
12.4
M2_58
12.3
M2_59
12.3
M2_60
12.1
M2_61
12.1
M2_62
12.0
M2_63
12.0
M2_64
12.0
M2_65
11.9
M2_66
11.6
M2_67
11.5
M2_68
11.5
M2_69
11.5
M2_70
11.4
M2_71
11.4
M2_72
11.4
M2_73
11.3
M2_74
11.3
M2_75
10.9
M2_76
10.7
M2_77
10.6
M2_78
10.5
M2_79
10.4
M2_80
10.4
M2_81
10.3
M2_82
10.3
M2_83
10.2
M2_84
10.0
M2_85
9.6
M2_86
9.5
M2_87
9.5
M2_88
9.4
M2_89
9.2
M2_90
8.9
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