A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
24.0
nTPM
Monaco:
25.4
nTPM
Schmiedel:
25.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.0
HPA sample
nTPM
Classical monocyte nTPM: 20.1
Samples: 6
Max nTPM: 27.8
Min nTPM: 12.2
P10809_1003
12.2
P10809_1020
20.8
P10809_1039
27.8
P10809_1058
18.0
P10809_1080
18.3
P10809_1107
23.2
Intermediate monocyte nTPM: 24.1
Samples: 6
Max nTPM: 28.7
Min nTPM: 17.2
P10809_1004
18.1
P10809_1023
27.0
P10809_1042
25.5
P10809_1061
27.9
P10809_1081
17.2
P10809_1108
28.7
Non-classical monocyte nTPM: 23.8
Samples: 5
Max nTPM: 36.7
Min nTPM: 15.3
P10809_1005
15.3
P10809_1053
20.4
P10809_1072
36.7
P10809_1082
22.8
P10809_1109
24.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.4
Monaco sample
nTPM
Classical monocyte nTPM: 25.4
Samples: 4
Max nTPM: 28.7
Min nTPM: 17.6
RHH5313_R3680
28.1
RHH5221_R3593
17.6
RHH5250_R3622
27.1
RHH5279_R3651
28.7
Intermediate monocyte nTPM: 20.6
Samples: 4
Max nTPM: 28.7
Min nTPM: 15.0
RHH5314_R3681
28.7
RHH5222_R3594
15.3
RHH5251_R3623
15.0
RHH5280_R3652
23.5
Non-classical monocyte nTPM: 20.8
Samples: 4
Max nTPM: 24.3
Min nTPM: 16.2
RHH5315_R3682
24.3
RHH5223_R3595
21.9
RHH5252_R3624
16.2
RHH5281_R3653
20.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.2
Schmiedel sample id
TPM
Classical monocyte TPM: 18.4
Samples: 91
Max TPM: 31.0
Min TPM: 9.4
MONOCYTES_1
31.0
MONOCYTES_2
28.3
MONOCYTES_3
26.3
MONOCYTES_4
25.4
MONOCYTES_5
24.9
MONOCYTES_6
24.7
MONOCYTES_7
24.6
MONOCYTES_8
24.5
MONOCYTES_9
24.3
MONOCYTES_10
23.5
MONOCYTES_11
23.4
MONOCYTES_12
23.1
MONOCYTES_13
23.0
MONOCYTES_14
22.9
MONOCYTES_15
22.6
MONOCYTES_16
22.5
MONOCYTES_17
22.4
MONOCYTES_18
22.4
MONOCYTES_19
22.3
MONOCYTES_20
22.0
MONOCYTES_21
21.7
MONOCYTES_22
21.6
MONOCYTES_23
21.1
MONOCYTES_24
21.1
MONOCYTES_25
20.7
MONOCYTES_26
20.4
MONOCYTES_27
20.2
MONOCYTES_28
20.0
MONOCYTES_29
19.9
MONOCYTES_30
19.8
MONOCYTES_31
19.8
MONOCYTES_32
19.7
MONOCYTES_33
19.3
MONOCYTES_34
19.2
MONOCYTES_35
18.7
MONOCYTES_36
18.7
MONOCYTES_37
18.6
MONOCYTES_38
18.6
MONOCYTES_39
18.3
MONOCYTES_40
18.2
MONOCYTES_41
18.2
MONOCYTES_42
18.1
MONOCYTES_43
18.1
MONOCYTES_44
18.0
MONOCYTES_45
18.0
MONOCYTES_46
18.0
MONOCYTES_47
17.9
MONOCYTES_48
17.9
MONOCYTES_49
17.9
MONOCYTES_50
17.7
MONOCYTES_51
17.5
MONOCYTES_52
17.3
MONOCYTES_53
17.3
MONOCYTES_54
17.2
MONOCYTES_55
17.0
MONOCYTES_56
17.0
MONOCYTES_57
16.9
MONOCYTES_58
16.9
MONOCYTES_59
16.6
MONOCYTES_60
16.6
MONOCYTES_61
16.6
MONOCYTES_62
16.5
MONOCYTES_63
16.3
MONOCYTES_64
16.2
MONOCYTES_65
16.0
MONOCYTES_66
15.8
MONOCYTES_67
15.7
MONOCYTES_68
15.6
MONOCYTES_69
15.5
MONOCYTES_70
15.4
MONOCYTES_71
15.3
MONOCYTES_72
15.3
MONOCYTES_73
15.1
MONOCYTES_74
15.0
MONOCYTES_75
14.8
MONOCYTES_76
14.8
MONOCYTES_77
14.7
MONOCYTES_78
14.6
MONOCYTES_79
14.3
MONOCYTES_80
14.2
MONOCYTES_81
14.1
MONOCYTES_82
14.0
MONOCYTES_83
13.9
MONOCYTES_84
13.6
MONOCYTES_85
13.6
MONOCYTES_86
13.6
MONOCYTES_87
13.2
MONOCYTES_88
11.9
MONOCYTES_89
11.8
MONOCYTES_90
11.7
MONOCYTES_91
9.4
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Non-classical monocyte TPM: 25.2
Samples: 90
Max TPM: 44.7
Min TPM: 15.5
M2_1
44.7
M2_2
41.2
M2_3
41.0
M2_4
35.3
M2_5
35.2
M2_6
35.1
M2_7
35.0
M2_8
33.9
M2_9
33.1
M2_10
32.8
M2_11
32.3
M2_12
32.0
M2_13
31.7
M2_14
31.3
M2_15
30.5
M2_16
30.4
M2_17
29.7
M2_18
29.4
M2_19
29.2
M2_20
28.8
M2_21
28.5
M2_22
28.4
M2_23
27.8
M2_24
27.3
M2_25
27.2
M2_26
27.0
M2_27
27.0
M2_28
27.0
M2_29
26.8
M2_30
26.5
M2_31
26.2
M2_32
26.2
M2_33
25.9
M2_34
25.7
M2_35
25.5
M2_36
25.1
M2_37
25.0
M2_38
24.9
M2_39
24.8
M2_40
24.8
M2_41
24.6
M2_42
24.5
M2_43
24.5
M2_44
24.2
M2_45
24.0
M2_46
23.7
M2_47
23.7
M2_48
23.7
M2_49
23.7
M2_50
23.7
M2_51
23.6
M2_52
23.4
M2_53
23.2
M2_54
23.1
M2_55
22.9
M2_56
22.8
M2_57
22.5
M2_58
22.4
M2_59
22.2
M2_60
22.1
M2_61
22.0
M2_62
21.9
M2_63
21.8
M2_64
21.6
M2_65
21.4
M2_66
21.3
M2_67
21.3
M2_68
21.1
M2_69
21.1
M2_70
21.1
M2_71
21.0
M2_72
20.7
M2_73
20.6
M2_74
20.3
M2_75
20.2
M2_76
20.1
M2_77
20.1
M2_78
20.1
M2_79
19.9
M2_80
19.8
M2_81
19.7
M2_82
19.4
M2_83
19.2
M2_84
18.9
M2_85
18.9
M2_86
17.8
M2_87
17.5
M2_88
17.4
M2_89
16.9
M2_90
15.5
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