A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.7
nTPM
Monaco:
56.9
nTPM
Schmiedel:
16.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.7
HPA sample
nTPM
Memory B-cell nTPM: 5.2
Samples: 6
Max nTPM: 9.2
Min nTPM: 1.7
P10809_1017
5.4
P10809_1025
6.9
P10809_1044
1.7
P10809_1063
9.2
P10809_1092
5.1
P10809_1105
2.8
Naive B-cell nTPM: 6.7
Samples: 6
Max nTPM: 12.1
Min nTPM: 2.5
P10809_1011
8.8
P10809_1029
7.0
P10809_1048
12.1
P10809_1067
2.5
P10809_1091
4.9
P10809_1104
4.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
56.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 29.2
Samples: 4
Max nTPM: 33.1
Min nTPM: 22.6
RHH5310_R3677
22.6
RHH5218_R3590
29.2
RHH5247_R3619
32.0
RHH5276_R3648
33.1
Naive B-cell nTPM: 57.0
Samples: 4
Max nTPM: 73.6
Min nTPM: 40.4
RHH5308_R3675
73.6
RHH5216_R3588
60.5
RHH5245_R3617
40.4
RHH5274_R3646
53.3
Non-switched memory B-cell nTPM: 36.2
Samples: 4
Max nTPM: 48.3
Min nTPM: 25.0
RHH5309_R3676
37.0
RHH5217_R3589
48.3
RHH5246_R3618
25.0
RHH5275_R3647
34.5
Plasmablast nTPM: 16.1
Samples: 4
Max nTPM: 24.7
Min nTPM: 9.6
RHH5312_R3679
14.9
RHH5220_R3592
15.3
RHH5249_R3621
9.6
RHH5278_R3650
24.7
Switched memory B-cell nTPM: 35.4
Samples: 4
Max nTPM: 56.0
Min nTPM: 23.9
RHH5311_R3678
31.1
RHH5219_R3591
56.0
RHH5248_R3620
30.6
RHH5277_R3649
23.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.8
Schmiedel sample id
TPM
Naive B-cell TPM: 16.8
Samples: 91
Max TPM: 25.2
Min TPM: 10.7
B_CELL_NAIVE_1
25.2
B_CELL_NAIVE_2
25.0
B_CELL_NAIVE_3
23.1
B_CELL_NAIVE_4
21.6
B_CELL_NAIVE_5
21.2
B_CELL_NAIVE_6
20.9
B_CELL_NAIVE_7
20.4
B_CELL_NAIVE_8
20.4
B_CELL_NAIVE_9
20.3
B_CELL_NAIVE_10
20.1
B_CELL_NAIVE_11
20.0
B_CELL_NAIVE_12
19.9
B_CELL_NAIVE_13
19.9
B_CELL_NAIVE_14
19.5
B_CELL_NAIVE_15
19.5
B_CELL_NAIVE_16
19.4
B_CELL_NAIVE_17
19.4
B_CELL_NAIVE_18
19.3
B_CELL_NAIVE_19
19.1
B_CELL_NAIVE_20
19.1
B_CELL_NAIVE_21
18.9
B_CELL_NAIVE_22
18.9
B_CELL_NAIVE_23
18.8
B_CELL_NAIVE_24
18.7
B_CELL_NAIVE_25
18.7
B_CELL_NAIVE_26
18.6
B_CELL_NAIVE_27
18.3
B_CELL_NAIVE_28
18.2
B_CELL_NAIVE_29
18.2
B_CELL_NAIVE_30
18.2
B_CELL_NAIVE_31
18.1
B_CELL_NAIVE_32
17.9
B_CELL_NAIVE_33
17.9
B_CELL_NAIVE_34
17.8
B_CELL_NAIVE_35
17.7
B_CELL_NAIVE_36
17.6
B_CELL_NAIVE_37
17.5
B_CELL_NAIVE_38
17.3
B_CELL_NAIVE_39
17.3
B_CELL_NAIVE_40
17.2
B_CELL_NAIVE_41
17.2
B_CELL_NAIVE_42
17.1
B_CELL_NAIVE_43
17.1
B_CELL_NAIVE_44
17.1
B_CELL_NAIVE_45
17.1
B_CELL_NAIVE_46
16.9
B_CELL_NAIVE_47
16.9
B_CELL_NAIVE_48
16.8
B_CELL_NAIVE_49
16.8
B_CELL_NAIVE_50
16.7
B_CELL_NAIVE_51
16.7
B_CELL_NAIVE_52
16.4
B_CELL_NAIVE_53
16.3
B_CELL_NAIVE_54
16.3
B_CELL_NAIVE_55
16.2
B_CELL_NAIVE_56
16.1
B_CELL_NAIVE_57
15.9
B_CELL_NAIVE_58
15.8
B_CELL_NAIVE_59
15.7
B_CELL_NAIVE_60
15.7
B_CELL_NAIVE_61
15.6
B_CELL_NAIVE_62
15.5
B_CELL_NAIVE_63
15.5
B_CELL_NAIVE_64
15.4
B_CELL_NAIVE_65
15.1
B_CELL_NAIVE_66
14.9
B_CELL_NAIVE_67
14.7
B_CELL_NAIVE_68
14.7
B_CELL_NAIVE_69
14.6
B_CELL_NAIVE_70
14.4
B_CELL_NAIVE_71
14.4
B_CELL_NAIVE_72
14.2
B_CELL_NAIVE_73
14.2
B_CELL_NAIVE_74
14.2
B_CELL_NAIVE_75
14.1
B_CELL_NAIVE_76
14.1
B_CELL_NAIVE_77
13.8
B_CELL_NAIVE_78
13.7
B_CELL_NAIVE_79
13.7
B_CELL_NAIVE_80
13.4
B_CELL_NAIVE_81
13.3
B_CELL_NAIVE_82
13.2
B_CELL_NAIVE_83
13.0
B_CELL_NAIVE_84
12.8
B_CELL_NAIVE_85
12.7
B_CELL_NAIVE_86
12.3
B_CELL_NAIVE_87
11.5
B_CELL_NAIVE_88
11.4
B_CELL_NAIVE_89
10.9
B_CELL_NAIVE_90
10.8
B_CELL_NAIVE_91
10.7
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