A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
53.5
nTPM
Monaco:
144.1
nTPM
Schmiedel:
78.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
53.5
HPA sample
nTPM
Classical monocyte nTPM: 53.6
Samples: 6
Max nTPM: 65.4
Min nTPM: 37.9
P10809_1003
56.6
P10809_1020
65.4
P10809_1039
59.8
P10809_1058
43.8
P10809_1080
57.8
P10809_1107
37.9
Intermediate monocyte nTPM: 34.2
Samples: 6
Max nTPM: 43.5
Min nTPM: 27.1
P10809_1004
29.9
P10809_1023
36.9
P10809_1042
33.3
P10809_1061
43.5
P10809_1081
34.7
P10809_1108
27.1
Non-classical monocyte nTPM: 23.8
Samples: 5
Max nTPM: 35.1
Min nTPM: 12.7
P10809_1005
24.6
P10809_1053
35.1
P10809_1072
12.7
P10809_1082
21.5
P10809_1109
25.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
144.1
Monaco sample
nTPM
Classical monocyte nTPM: 144.1
Samples: 4
Max nTPM: 168.6
Min nTPM: 130.1
RHH5313_R3680
130.1
RHH5221_R3593
134.4
RHH5250_R3622
168.6
RHH5279_R3651
143.3
Intermediate monocyte nTPM: 97.4
Samples: 4
Max nTPM: 109.8
Min nTPM: 83.9
RHH5314_R3681
109.8
RHH5222_R3594
107.4
RHH5251_R3623
83.9
RHH5280_R3652
88.3
Non-classical monocyte nTPM: 78.7
Samples: 4
Max nTPM: 89.3
Min nTPM: 61.7
RHH5315_R3682
61.7
RHH5223_R3595
89.3
RHH5252_R3624
74.6
RHH5281_R3653
89.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.1
Schmiedel sample id
TPM
Classical monocyte TPM: 78.1
Samples: 91
Max TPM: 110.6
Min TPM: 56.4
MONOCYTES_1
110.6
MONOCYTES_2
104.5
MONOCYTES_3
100.2
MONOCYTES_4
98.4
MONOCYTES_5
96.9
MONOCYTES_6
94.2
MONOCYTES_7
94.1
MONOCYTES_8
94.1
MONOCYTES_9
94.0
MONOCYTES_10
92.8
MONOCYTES_11
92.1
MONOCYTES_12
90.6
MONOCYTES_13
88.8
MONOCYTES_14
88.8
MONOCYTES_15
88.7
MONOCYTES_16
88.5
MONOCYTES_17
87.9
MONOCYTES_18
87.5
MONOCYTES_19
87.5
MONOCYTES_20
85.7
MONOCYTES_21
84.8
MONOCYTES_22
84.7
MONOCYTES_23
84.6
MONOCYTES_24
84.2
MONOCYTES_25
84.0
MONOCYTES_26
83.7
MONOCYTES_27
83.1
MONOCYTES_28
83.1
MONOCYTES_29
82.8
MONOCYTES_30
82.2
MONOCYTES_31
80.3
MONOCYTES_32
80.2
MONOCYTES_33
80.0
MONOCYTES_34
79.8
MONOCYTES_35
79.8
MONOCYTES_36
79.8
MONOCYTES_37
79.4
MONOCYTES_38
79.1
MONOCYTES_39
78.7
MONOCYTES_40
78.3
MONOCYTES_41
78.0
MONOCYTES_42
77.7
MONOCYTES_43
77.5
MONOCYTES_44
77.4
MONOCYTES_45
77.2
MONOCYTES_46
77.2
MONOCYTES_47
76.7
MONOCYTES_48
75.9
MONOCYTES_49
75.7
MONOCYTES_50
75.7
MONOCYTES_51
75.7
MONOCYTES_52
75.6
MONOCYTES_53
75.3
MONOCYTES_54
75.1
MONOCYTES_55
74.8
MONOCYTES_56
74.6
MONOCYTES_57
74.2
MONOCYTES_58
74.0
MONOCYTES_59
73.9
MONOCYTES_60
73.8
MONOCYTES_61
73.5
MONOCYTES_62
73.5
MONOCYTES_63
73.5
MONOCYTES_64
73.4
MONOCYTES_65
73.4
MONOCYTES_66
73.1
MONOCYTES_67
72.9
MONOCYTES_68
72.6
MONOCYTES_69
71.7
MONOCYTES_70
70.4
MONOCYTES_71
70.3
MONOCYTES_72
70.3
MONOCYTES_73
68.2
MONOCYTES_74
68.0
MONOCYTES_75
67.9
MONOCYTES_76
67.2
MONOCYTES_77
66.6
MONOCYTES_78
66.6
MONOCYTES_79
66.3
MONOCYTES_80
66.1
MONOCYTES_81
65.6
MONOCYTES_82
65.3
MONOCYTES_83
64.2
MONOCYTES_84
64.0
MONOCYTES_85
63.2
MONOCYTES_86
62.9
MONOCYTES_87
61.8
MONOCYTES_88
61.7
MONOCYTES_89
61.5
MONOCYTES_90
57.3
MONOCYTES_91
56.4
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Non-classical monocyte TPM: 50.1
Samples: 90
Max TPM: 80.6
Min TPM: 27.1
M2_1
80.6
M2_2
77.3
M2_3
76.3
M2_4
70.3
M2_5
67.9
M2_6
66.6
M2_7
66.1
M2_8
65.7
M2_9
65.7
M2_10
65.2
M2_11
64.2
M2_12
62.7
M2_13
62.7
M2_14
60.0
M2_15
59.6
M2_16
58.4
M2_17
57.7
M2_18
57.6
M2_19
56.7
M2_20
55.9
M2_21
55.5
M2_22
55.2
M2_23
54.7
M2_24
54.7
M2_25
54.6
M2_26
54.1
M2_27
54.0
M2_28
53.4
M2_29
52.6
M2_30
52.4
M2_31
52.3
M2_32
52.1
M2_33
52.0
M2_34
51.8
M2_35
51.5
M2_36
51.4
M2_37
50.9
M2_38
50.8
M2_39
50.8
M2_40
50.8
M2_41
50.1
M2_42
49.7
M2_43
49.5
M2_44
49.5
M2_45
49.5
M2_46
49.2
M2_47
48.9
M2_48
48.5
M2_49
48.2
M2_50
47.9
M2_51
47.7
M2_52
47.3
M2_53
47.1
M2_54
46.9
M2_55
46.7
M2_56
46.6
M2_57
46.4
M2_58
46.1
M2_59
45.3
M2_60
44.9
M2_61
44.7
M2_62
44.2
M2_63
44.0
M2_64
43.6
M2_65
43.4
M2_66
43.1
M2_67
43.0
M2_68
43.0
M2_69
42.7
M2_70
42.6
M2_71
42.3
M2_72
42.2
M2_73
42.1
M2_74
41.4
M2_75
41.4
M2_76
41.4
M2_77
41.0
M2_78
40.8
M2_79
40.6
M2_80
40.3
M2_81
40.2
M2_82
39.4
M2_83
39.0
M2_84
37.6
M2_85
37.5
M2_86
35.6
M2_87
34.1
M2_88
33.1
M2_89
30.1
M2_90
27.1
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