A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
35.8
nTPM
Monaco:
71.3
nTPM
Schmiedel:
75.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.8
HPA sample
nTPM
Classical monocyte nTPM: 22.0
Samples: 6
Max nTPM: 30.3
Min nTPM: 15.6
P10809_1003
16.4
P10809_1020
29.8
P10809_1039
30.3
P10809_1058
15.6
P10809_1080
15.8
P10809_1107
24.1
Intermediate monocyte nTPM: 29.5
Samples: 6
Max nTPM: 53.3
Min nTPM: 10.1
P10809_1004
28.0
P10809_1023
53.3
P10809_1042
31.6
P10809_1061
24.4
P10809_1081
10.1
P10809_1108
29.4
Non-classical monocyte nTPM: 35.8
Samples: 5
Max nTPM: 57.3
Min nTPM: 25.1
P10809_1005
25.1
P10809_1053
29.1
P10809_1072
57.3
P10809_1082
31.3
P10809_1109
36.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.3
Monaco sample
nTPM
Classical monocyte nTPM: 65.2
Samples: 4
Max nTPM: 70.9
Min nTPM: 53.4
RHH5313_R3680
68.3
RHH5221_R3593
70.9
RHH5250_R3622
53.4
RHH5279_R3651
68.0
Intermediate monocyte nTPM: 59.5
Samples: 4
Max nTPM: 74.9
Min nTPM: 35.0
RHH5314_R3681
72.0
RHH5222_R3594
35.0
RHH5251_R3623
74.9
RHH5280_R3652
56.2
Non-classical monocyte nTPM: 71.3
Samples: 4
Max nTPM: 82.0
Min nTPM: 48.9
RHH5315_R3682
82.0
RHH5223_R3595
48.9
RHH5252_R3624
79.9
RHH5281_R3653
74.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
75.9
Schmiedel sample id
TPM
Classical monocyte TPM: 57.0
Samples: 91
Max TPM: 73.9
Min TPM: 42.7
MONOCYTES_1
73.9
MONOCYTES_2
67.8
MONOCYTES_3
66.8
MONOCYTES_4
66.4
MONOCYTES_5
65.2
MONOCYTES_6
65.1
MONOCYTES_7
65.0
MONOCYTES_8
64.8
MONOCYTES_9
64.4
MONOCYTES_10
64.3
MONOCYTES_11
64.3
MONOCYTES_12
63.9
MONOCYTES_13
63.9
MONOCYTES_14
63.8
MONOCYTES_15
63.2
MONOCYTES_16
62.9
MONOCYTES_17
62.9
MONOCYTES_18
62.8
MONOCYTES_19
62.8
MONOCYTES_20
62.4
MONOCYTES_21
62.3
MONOCYTES_22
62.2
MONOCYTES_23
62.1
MONOCYTES_24
61.9
MONOCYTES_25
61.8
MONOCYTES_26
60.9
MONOCYTES_27
60.9
MONOCYTES_28
60.8
MONOCYTES_29
60.7
MONOCYTES_30
60.6
MONOCYTES_31
60.2
MONOCYTES_32
59.9
MONOCYTES_33
59.6
MONOCYTES_34
59.5
MONOCYTES_35
59.3
MONOCYTES_36
59.1
MONOCYTES_37
58.2
MONOCYTES_38
57.9
MONOCYTES_39
57.9
MONOCYTES_40
57.8
MONOCYTES_41
57.5
MONOCYTES_42
57.3
MONOCYTES_43
57.3
MONOCYTES_44
56.7
MONOCYTES_45
56.5
MONOCYTES_46
56.0
MONOCYTES_47
55.9
MONOCYTES_48
55.9
MONOCYTES_49
55.6
MONOCYTES_50
55.6
MONOCYTES_51
55.5
MONOCYTES_52
55.3
MONOCYTES_53
55.2
MONOCYTES_54
55.1
MONOCYTES_55
55.1
MONOCYTES_56
55.0
MONOCYTES_57
54.9
MONOCYTES_58
54.9
MONOCYTES_59
54.8
MONOCYTES_60
54.7
MONOCYTES_61
54.7
MONOCYTES_62
54.4
MONOCYTES_63
53.9
MONOCYTES_64
53.8
MONOCYTES_65
53.7
MONOCYTES_66
53.7
MONOCYTES_67
53.5
MONOCYTES_68
53.5
MONOCYTES_69
53.0
MONOCYTES_70
52.9
MONOCYTES_71
52.8
MONOCYTES_72
52.6
MONOCYTES_73
52.1
MONOCYTES_74
51.3
MONOCYTES_75
51.0
MONOCYTES_76
50.9
MONOCYTES_77
50.7
MONOCYTES_78
50.3
MONOCYTES_79
50.3
MONOCYTES_80
50.2
MONOCYTES_81
49.9
MONOCYTES_82
49.8
MONOCYTES_83
49.6
MONOCYTES_84
49.4
MONOCYTES_85
47.8
MONOCYTES_86
47.7
MONOCYTES_87
47.5
MONOCYTES_88
46.9
MONOCYTES_89
46.7
MONOCYTES_90
42.8
MONOCYTES_91
42.7
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Non-classical monocyte TPM: 75.9
Samples: 90
Max TPM: 89.5
Min TPM: 61.4
M2_1
89.5
M2_2
89.4
M2_3
87.9
M2_4
87.8
M2_5
87.8
M2_6
86.8
M2_7
86.5
M2_8
86.1
M2_9
85.8
M2_10
85.7
M2_11
85.3
M2_12
83.7
M2_13
83.5
M2_14
83.0
M2_15
82.8
M2_16
82.8
M2_17
82.8
M2_18
82.4
M2_19
82.4
M2_20
81.3
M2_21
81.2
M2_22
81.1
M2_23
81.0
M2_24
80.2
M2_25
80.2
M2_26
80.2
M2_27
80.1
M2_28
79.6
M2_29
79.6
M2_30
79.2
M2_31
79.1
M2_32
79.0
M2_33
78.6
M2_34
78.4
M2_35
77.8
M2_36
77.8
M2_37
77.8
M2_38
77.7
M2_39
77.6
M2_40
77.6
M2_41
77.4
M2_42
77.1
M2_43
76.2
M2_44
76.0
M2_45
75.8
M2_46
75.8
M2_47
75.7
M2_48
75.7
M2_49
74.9
M2_50
74.3
M2_51
74.2
M2_52
74.2
M2_53
74.1
M2_54
73.9
M2_55
73.4
M2_56
73.2
M2_57
73.1
M2_58
73.1
M2_59
73.0
M2_60
72.8
M2_61
72.4
M2_62
72.3
M2_63
72.3
M2_64
72.2
M2_65
71.9
M2_66
71.6
M2_67
71.4
M2_68
70.5
M2_69
70.3
M2_70
70.0
M2_71
70.0
M2_72
69.6
M2_73
69.5
M2_74
68.9
M2_75
68.6
M2_76
68.4
M2_77
68.1
M2_78
68.0
M2_79
68.0
M2_80
67.3
M2_81
67.2
M2_82
66.9
M2_83
66.7
M2_84
65.9
M2_85
65.8
M2_86
65.5
M2_87
64.2
M2_88
62.5
M2_89
62.3
M2_90
61.4
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