A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.7
nTPM
Monaco:
58.9
nTPM
Schmiedel:
14.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.7
HPA sample
nTPM
Classical monocyte nTPM: 26.2
Samples: 6
Max nTPM: 32.4
Min nTPM: 21.2
P10809_1003
25.3
P10809_1020
32.4
P10809_1039
32.0
P10809_1058
23.6
P10809_1080
22.8
P10809_1107
21.2
Intermediate monocyte nTPM: 30.8
Samples: 6
Max nTPM: 57.5
Min nTPM: 20.3
P10809_1004
22.7
P10809_1023
30.1
P10809_1042
29.6
P10809_1061
57.5
P10809_1081
24.3
P10809_1108
20.3
Non-classical monocyte nTPM: 23.9
Samples: 5
Max nTPM: 30.0
Min nTPM: 19.2
P10809_1005
20.0
P10809_1053
29.3
P10809_1072
19.2
P10809_1082
20.9
P10809_1109
30.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.9
Monaco sample
nTPM
Classical monocyte nTPM: 47.6
Samples: 4
Max nTPM: 57.8
Min nTPM: 34.4
RHH5313_R3680
48.6
RHH5221_R3593
34.4
RHH5250_R3622
49.6
RHH5279_R3651
57.8
Intermediate monocyte nTPM: 58.9
Samples: 4
Max nTPM: 68.0
Min nTPM: 46.3
RHH5314_R3681
46.3
RHH5222_R3594
63.6
RHH5251_R3623
68.0
RHH5280_R3652
57.7
Non-classical monocyte nTPM: 53.1
Samples: 4
Max nTPM: 63.6
Min nTPM: 40.0
RHH5315_R3682
47.3
RHH5223_R3595
40.0
RHH5252_R3624
61.6
RHH5281_R3653
63.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.1
Schmiedel sample id
TPM
Classical monocyte TPM: 9.2
Samples: 91
Max TPM: 14.1
Min TPM: 4.3
MONOCYTES_1
14.1
MONOCYTES_2
14.0
MONOCYTES_3
13.6
MONOCYTES_4
13.3
MONOCYTES_5
13.0
MONOCYTES_6
12.7
MONOCYTES_7
12.5
MONOCYTES_8
12.3
MONOCYTES_9
12.2
MONOCYTES_10
12.0
MONOCYTES_11
11.6
MONOCYTES_12
11.5
MONOCYTES_13
11.4
MONOCYTES_14
11.3
MONOCYTES_15
11.3
MONOCYTES_16
11.0
MONOCYTES_17
10.9
MONOCYTES_18
10.9
MONOCYTES_19
10.7
MONOCYTES_20
10.7
MONOCYTES_21
10.5
MONOCYTES_22
10.4
MONOCYTES_23
10.4
MONOCYTES_24
10.2
MONOCYTES_25
10.2
MONOCYTES_26
10.1
MONOCYTES_27
10.0
MONOCYTES_28
10.0
MONOCYTES_29
9.9
MONOCYTES_30
9.9
MONOCYTES_31
9.7
MONOCYTES_32
9.6
MONOCYTES_33
9.6
MONOCYTES_34
9.5
MONOCYTES_35
9.4
MONOCYTES_36
9.2
MONOCYTES_37
9.2
MONOCYTES_38
9.1
MONOCYTES_39
9.1
MONOCYTES_40
9.0
MONOCYTES_41
9.0
MONOCYTES_42
9.0
MONOCYTES_43
9.0
MONOCYTES_44
9.0
MONOCYTES_45
8.9
MONOCYTES_46
8.9
MONOCYTES_47
8.9
MONOCYTES_48
8.9
MONOCYTES_49
8.9
MONOCYTES_50
8.8
MONOCYTES_51
8.8
MONOCYTES_52
8.7
MONOCYTES_53
8.7
MONOCYTES_54
8.6
MONOCYTES_55
8.6
MONOCYTES_56
8.5
MONOCYTES_57
8.4
MONOCYTES_58
8.3
MONOCYTES_59
8.3
MONOCYTES_60
8.3
MONOCYTES_61
8.2
MONOCYTES_62
8.2
MONOCYTES_63
8.2
MONOCYTES_64
8.1
MONOCYTES_65
8.0
MONOCYTES_66
8.0
MONOCYTES_67
7.9
MONOCYTES_68
7.9
MONOCYTES_69
7.8
MONOCYTES_70
7.8
MONOCYTES_71
7.8
MONOCYTES_72
7.8
MONOCYTES_73
7.8
MONOCYTES_74
7.7
MONOCYTES_75
7.5
MONOCYTES_76
7.4
MONOCYTES_77
7.4
MONOCYTES_78
7.3
MONOCYTES_79
7.3
MONOCYTES_80
7.2
MONOCYTES_81
7.1
MONOCYTES_82
7.0
MONOCYTES_83
7.0
MONOCYTES_84
6.6
MONOCYTES_85
6.4
MONOCYTES_86
6.1
MONOCYTES_87
5.9
MONOCYTES_88
5.8
MONOCYTES_89
5.5
MONOCYTES_90
5.4
MONOCYTES_91
4.3
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Non-classical monocyte TPM: 14.1
Samples: 90
Max TPM: 21.9
Min TPM: 8.9
M2_1
21.9
M2_2
21.3
M2_3
21.1
M2_4
20.8
M2_5
19.8
M2_6
19.1
M2_7
18.3
M2_8
18.2
M2_9
18.1
M2_10
18.0
M2_11
17.6
M2_12
17.6
M2_13
17.5
M2_14
17.3
M2_15
17.2
M2_16
16.9
M2_17
16.9
M2_18
16.8
M2_19
16.6
M2_20
16.6
M2_21
16.4
M2_22
16.1
M2_23
16.0
M2_24
16.0
M2_25
16.0
M2_26
15.9
M2_27
15.7
M2_28
15.7
M2_29
15.6
M2_30
15.4
M2_31
15.4
M2_32
15.2
M2_33
15.1
M2_34
14.9
M2_35
14.9
M2_36
14.5
M2_37
14.5
M2_38
14.4
M2_39
14.2
M2_40
13.9
M2_41
13.8
M2_42
13.8
M2_43
13.7
M2_44
13.7
M2_45
13.6
M2_46
13.6
M2_47
13.6
M2_48
13.5
M2_49
13.5
M2_50
13.5
M2_51
13.4
M2_52
13.2
M2_53
13.1
M2_54
13.0
M2_55
13.0
M2_56
13.0
M2_57
12.6
M2_58
12.4
M2_59
12.3
M2_60
12.3
M2_61
12.1
M2_62
12.1
M2_63
12.1
M2_64
12.1
M2_65
12.1
M2_66
12.1
M2_67
12.0
M2_68
11.6
M2_69
11.6
M2_70
11.5
M2_71
11.4
M2_72
11.4
M2_73
11.4
M2_74
11.3
M2_75
11.1
M2_76
11.0
M2_77
11.0
M2_78
10.9
M2_79
10.8
M2_80
10.8
M2_81
10.7
M2_82
10.6
M2_83
10.6
M2_84
10.5
M2_85
10.3
M2_86
9.9
M2_87
9.9
M2_88
9.6
M2_89
9.3
M2_90
8.9
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