A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.3
nTPM
Monaco:
51.9
nTPM
Schmiedel:
34.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.3
HPA sample
nTPM
Classical monocyte nTPM: 6.5
Samples: 6
Max nTPM: 8.0
Min nTPM: 4.6
P10809_1003
7.4
P10809_1020
7.2
P10809_1039
8.0
P10809_1058
4.6
P10809_1080
5.5
P10809_1107
6.2
Intermediate monocyte nTPM: 9.3
Samples: 6
Max nTPM: 13.7
Min nTPM: 3.3
P10809_1004
10.3
P10809_1023
13.7
P10809_1042
8.8
P10809_1061
7.5
P10809_1081
3.3
P10809_1108
12.1
Non-classical monocyte nTPM: 9.1
Samples: 5
Max nTPM: 13.0
Min nTPM: 5.2
P10809_1005
13.0
P10809_1053
5.2
P10809_1072
8.3
P10809_1082
10.3
P10809_1109
8.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.9
Monaco sample
nTPM
Classical monocyte nTPM: 41.1
Samples: 4
Max nTPM: 64.9
Min nTPM: 32.3
RHH5313_R3680
33.7
RHH5221_R3593
64.9
RHH5250_R3622
32.3
RHH5279_R3651
33.6
Intermediate monocyte nTPM: 45.4
Samples: 4
Max nTPM: 64.0
Min nTPM: 31.1
RHH5314_R3681
38.7
RHH5222_R3594
64.0
RHH5251_R3623
47.6
RHH5280_R3652
31.1
Non-classical monocyte nTPM: 51.9
Samples: 4
Max nTPM: 70.8
Min nTPM: 42.5
RHH5315_R3682
43.4
RHH5223_R3595
70.8
RHH5252_R3624
42.5
RHH5281_R3653
50.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.1
Schmiedel sample id
TPM
Classical monocyte TPM: 14.9
Samples: 91
Max TPM: 24.2
Min TPM: 10.3
MONOCYTES_1
24.2
MONOCYTES_2
21.2
MONOCYTES_3
21.1
MONOCYTES_4
21.0
MONOCYTES_5
19.9
MONOCYTES_6
19.8
MONOCYTES_7
19.5
MONOCYTES_8
19.2
MONOCYTES_9
18.7
MONOCYTES_10
18.3
MONOCYTES_11
18.2
MONOCYTES_12
18.2
MONOCYTES_13
18.1
MONOCYTES_14
17.9
MONOCYTES_15
17.6
MONOCYTES_16
17.4
MONOCYTES_17
17.3
MONOCYTES_18
17.1
MONOCYTES_19
17.1
MONOCYTES_20
17.0
MONOCYTES_21
16.8
MONOCYTES_22
16.7
MONOCYTES_23
16.7
MONOCYTES_24
16.5
MONOCYTES_25
16.4
MONOCYTES_26
16.3
MONOCYTES_27
15.9
MONOCYTES_28
15.9
MONOCYTES_29
15.7
MONOCYTES_30
15.6
MONOCYTES_31
15.6
MONOCYTES_32
15.5
MONOCYTES_33
15.3
MONOCYTES_34
15.2
MONOCYTES_35
15.2
MONOCYTES_36
15.1
MONOCYTES_37
15.0
MONOCYTES_38
14.9
MONOCYTES_39
14.8
MONOCYTES_40
14.8
MONOCYTES_41
14.7
MONOCYTES_42
14.6
MONOCYTES_43
14.5
MONOCYTES_44
14.2
MONOCYTES_45
14.2
MONOCYTES_46
14.2
MONOCYTES_47
14.1
MONOCYTES_48
14.1
MONOCYTES_49
14.0
MONOCYTES_50
14.0
MONOCYTES_51
13.9
MONOCYTES_52
13.9
MONOCYTES_53
13.7
MONOCYTES_54
13.7
MONOCYTES_55
13.7
MONOCYTES_56
13.6
MONOCYTES_57
13.6
MONOCYTES_58
13.6
MONOCYTES_59
13.6
MONOCYTES_60
13.5
MONOCYTES_61
13.5
MONOCYTES_62
13.4
MONOCYTES_63
13.3
MONOCYTES_64
13.3
MONOCYTES_65
13.3
MONOCYTES_66
13.2
MONOCYTES_67
13.1
MONOCYTES_68
13.1
MONOCYTES_69
13.1
MONOCYTES_70
13.0
MONOCYTES_71
13.0
MONOCYTES_72
12.8
MONOCYTES_73
12.8
MONOCYTES_74
12.7
MONOCYTES_75
12.6
MONOCYTES_76
12.5
MONOCYTES_77
12.2
MONOCYTES_78
12.0
MONOCYTES_79
12.0
MONOCYTES_80
11.8
MONOCYTES_81
11.8
MONOCYTES_82
11.8
MONOCYTES_83
11.7
MONOCYTES_84
11.7
MONOCYTES_85
11.3
MONOCYTES_86
11.3
MONOCYTES_87
11.2
MONOCYTES_88
10.9
MONOCYTES_89
10.9
MONOCYTES_90
10.5
MONOCYTES_91
10.3
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Non-classical monocyte TPM: 34.1
Samples: 90
Max TPM: 59.4
Min TPM: 18.3
M2_1
59.4
M2_2
53.7
M2_3
51.7
M2_4
50.7
M2_5
50.3
M2_6
47.2
M2_7
45.4
M2_8
44.0
M2_9
44.0
M2_10
43.9
M2_11
43.3
M2_12
42.7
M2_13
42.1
M2_14
42.0
M2_15
41.4
M2_16
41.3
M2_17
41.1
M2_18
40.9
M2_19
40.9
M2_20
40.8
M2_21
40.1
M2_22
40.1
M2_23
39.2
M2_24
38.3
M2_25
38.2
M2_26
37.8
M2_27
37.2
M2_28
36.4
M2_29
36.4
M2_30
36.2
M2_31
35.6
M2_32
35.4
M2_33
35.2
M2_34
35.1
M2_35
34.9
M2_36
34.8
M2_37
34.6
M2_38
34.3
M2_39
34.2
M2_40
33.7
M2_41
33.6
M2_42
33.6
M2_43
33.5
M2_44
33.5
M2_45
32.8
M2_46
32.8
M2_47
32.7
M2_48
32.6
M2_49
32.6
M2_50
32.1
M2_51
31.9
M2_52
31.9
M2_53
31.8
M2_54
31.7
M2_55
31.3
M2_56
31.2
M2_57
31.0
M2_58
30.3
M2_59
30.2
M2_60
30.1
M2_61
29.1
M2_62
29.0
M2_63
28.9
M2_64
28.9
M2_65
28.8
M2_66
28.7
M2_67
28.5
M2_68
28.4
M2_69
28.3
M2_70
28.2
M2_71
28.0
M2_72
27.9
M2_73
27.9
M2_74
27.6
M2_75
27.4
M2_76
27.4
M2_77
27.0
M2_78
26.8
M2_79
26.5
M2_80
26.3
M2_81
26.2
M2_82
25.7
M2_83
25.7
M2_84
24.7
M2_85
24.6
M2_86
24.3
M2_87
23.3
M2_88
23.0
M2_89
22.2
M2_90
18.3
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