A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.2
nTPM
Monaco:
0.5
nTPM
Schmiedel:
30.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.2
HPA sample
nTPM
Classical monocyte nTPM: 0.0
Samples: 6
Max nTPM: 0.1
Min nTPM: 0.0
P10809_1003
0.1
P10809_1020
0.0
P10809_1039
0.0
P10809_1058
0.0
P10809_1080
0.0
P10809_1107
0.0
Intermediate monocyte nTPM: 0.2
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.0
P10809_1004
0.2
P10809_1023
0.1
P10809_1042
0.0
P10809_1061
1.1
P10809_1081
0.0
P10809_1108
0.0
Non-classical monocyte nTPM: 0.1
Samples: 5
Max nTPM: 0.3
Min nTPM: 0.0
P10809_1005
0.3
P10809_1053
0.2
P10809_1072
0.0
P10809_1082
0.1
P10809_1109
0.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.5
Monaco sample
nTPM
Classical monocyte nTPM: 0.2
Samples: 4
Max nTPM: 0.5
Min nTPM: 0.0
RHH5313_R3680
0.0
RHH5221_R3593
0.0
RHH5250_R3622
0.5
RHH5279_R3651
0.4
Intermediate monocyte nTPM: 0.6
Samples: 4
Max nTPM: 2.1
Min nTPM: 0.0
RHH5314_R3681
0.1
RHH5222_R3594
0.0
RHH5251_R3623
2.1
RHH5280_R3652
0.0
Non-classical monocyte nTPM: 0.1
Samples: 4
Max nTPM: 0.5
Min nTPM: 0.0
RHH5315_R3682
0.0
RHH5223_R3595
0.0
RHH5252_R3624
0.5
RHH5281_R3653
0.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.5
Schmiedel sample id
TPM
Classical monocyte TPM: 28.8
Samples: 91
Max TPM: 43.8
Min TPM: 16.9
MONOCYTES_1
43.8
MONOCYTES_2
43.4
MONOCYTES_3
42.4
MONOCYTES_4
38.6
MONOCYTES_5
38.1
MONOCYTES_6
38.0
MONOCYTES_7
37.8
MONOCYTES_8
37.7
MONOCYTES_9
37.4
MONOCYTES_10
37.2
MONOCYTES_11
37.1
MONOCYTES_12
36.3
MONOCYTES_13
35.9
MONOCYTES_14
35.7
MONOCYTES_15
35.6
MONOCYTES_16
34.9
MONOCYTES_17
34.9
MONOCYTES_18
34.4
MONOCYTES_19
34.3
MONOCYTES_20
33.8
MONOCYTES_21
33.5
MONOCYTES_22
33.0
MONOCYTES_23
32.2
MONOCYTES_24
31.8
MONOCYTES_25
31.7
MONOCYTES_26
31.7
MONOCYTES_27
31.5
MONOCYTES_28
31.3
MONOCYTES_29
31.2
MONOCYTES_30
30.6
MONOCYTES_31
30.4
MONOCYTES_32
30.2
MONOCYTES_33
30.1
MONOCYTES_34
29.9
MONOCYTES_35
29.9
MONOCYTES_36
29.6
MONOCYTES_37
29.6
MONOCYTES_38
29.1
MONOCYTES_39
29.0
MONOCYTES_40
28.8
MONOCYTES_41
28.7
MONOCYTES_42
28.2
MONOCYTES_43
28.2
MONOCYTES_44
28.2
MONOCYTES_45
28.1
MONOCYTES_46
28.0
MONOCYTES_47
27.9
MONOCYTES_48
27.8
MONOCYTES_49
27.8
MONOCYTES_50
27.6
MONOCYTES_51
27.4
MONOCYTES_52
27.0
MONOCYTES_53
27.0
MONOCYTES_54
27.0
MONOCYTES_55
26.9
MONOCYTES_56
26.9
MONOCYTES_57
26.7
MONOCYTES_58
26.1
MONOCYTES_59
26.1
MONOCYTES_60
25.9
MONOCYTES_61
25.9
MONOCYTES_62
25.8
MONOCYTES_63
25.4
MONOCYTES_64
25.4
MONOCYTES_65
25.1
MONOCYTES_66
25.0
MONOCYTES_67
24.8
MONOCYTES_68
24.7
MONOCYTES_69
24.5
MONOCYTES_70
24.0
MONOCYTES_71
23.9
MONOCYTES_72
23.5
MONOCYTES_73
23.4
MONOCYTES_74
23.3
MONOCYTES_75
22.9
MONOCYTES_76
22.8
MONOCYTES_77
22.8
MONOCYTES_78
22.8
MONOCYTES_79
22.8
MONOCYTES_80
22.7
MONOCYTES_81
22.5
MONOCYTES_82
22.4
MONOCYTES_83
22.3
MONOCYTES_84
22.2
MONOCYTES_85
22.2
MONOCYTES_86
21.8
MONOCYTES_87
21.5
MONOCYTES_88
20.6
MONOCYTES_89
18.2
MONOCYTES_90
17.7
MONOCYTES_91
16.9
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Non-classical monocyte TPM: 30.5
Samples: 90
Max TPM: 51.4
Min TPM: 13.4
M2_1
51.4
M2_2
51.0
M2_3
46.9
M2_4
46.3
M2_5
45.1
M2_6
45.0
M2_7
42.3
M2_8
40.5
M2_9
40.4
M2_10
40.1
M2_11
39.5
M2_12
39.3
M2_13
39.2
M2_14
38.9
M2_15
38.6
M2_16
38.5
M2_17
38.0
M2_18
37.8
M2_19
37.6
M2_20
37.1
M2_21
36.5
M2_22
36.2
M2_23
36.2
M2_24
35.9
M2_25
35.1
M2_26
34.9
M2_27
34.5
M2_28
34.2
M2_29
33.8
M2_30
33.8
M2_31
33.7
M2_32
33.4
M2_33
33.3
M2_34
33.0
M2_35
32.4
M2_36
31.9
M2_37
31.8
M2_38
31.3
M2_39
31.2
M2_40
31.1
M2_41
30.6
M2_42
30.0
M2_43
30.0
M2_44
29.5
M2_45
29.3
M2_46
29.2
M2_47
28.9
M2_48
28.6
M2_49
28.4
M2_50
28.2
M2_51
28.0
M2_52
27.9
M2_53
27.6
M2_54
27.5
M2_55
27.4
M2_56
27.1
M2_57
26.6
M2_58
26.6
M2_59
26.4
M2_60
25.9
M2_61
25.8
M2_62
25.7
M2_63
25.5
M2_64
25.4
M2_65
25.4
M2_66
25.4
M2_67
25.2
M2_68
25.0
M2_69
24.6
M2_70
24.4
M2_71
24.4
M2_72
24.1
M2_73
23.9
M2_74
23.8
M2_75
23.8
M2_76
23.2
M2_77
23.1
M2_78
22.9
M2_79
22.5
M2_80
21.6
M2_81
21.4
M2_82
21.2
M2_83
21.1
M2_84
21.0
M2_85
20.2
M2_86
20.1
M2_87
19.6
M2_88
18.5
M2_89
15.0
M2_90
13.4
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