A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.5
nTPM
Monaco:
21.6
nTPM
Schmiedel:
67.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.5
HPA sample
nTPM
Classical monocyte nTPM: 1.6
Samples: 6
Max nTPM: 2.3
Min nTPM: 0.9
P10809_1003
0.9
P10809_1020
1.6
P10809_1039
2.3
P10809_1058
1.8
P10809_1080
0.9
P10809_1107
1.8
Intermediate monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.5
Min nTPM: 0.8
P10809_1004
1.4
P10809_1023
0.8
P10809_1042
1.4
P10809_1061
1.1
P10809_1081
1.4
P10809_1108
2.5
Non-classical monocyte nTPM: 1.3
Samples: 5
Max nTPM: 2.3
Min nTPM: 0.3
P10809_1005
2.3
P10809_1053
0.8
P10809_1072
0.3
P10809_1082
1.6
P10809_1109
1.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.6
Monaco sample
nTPM
Classical monocyte nTPM: 20.8
Samples: 4
Max nTPM: 69.5
Min nTPM: 4.3
RHH5313_R3680
4.8
RHH5221_R3593
69.5
RHH5250_R3622
4.3
RHH5279_R3651
4.8
Intermediate monocyte nTPM: 21.7
Samples: 4
Max nTPM: 44.9
Min nTPM: 8.2
RHH5314_R3681
8.2
RHH5222_R3594
44.9
RHH5251_R3623
22.2
RHH5280_R3652
11.3
Non-classical monocyte nTPM: 15.8
Samples: 4
Max nTPM: 41.0
Min nTPM: 5.2
RHH5315_R3682
11.3
RHH5223_R3595
5.5
RHH5252_R3624
41.0
RHH5281_R3653
5.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.0
Schmiedel sample id
TPM
Classical monocyte TPM: 67.0
Samples: 91
Max TPM: 137.2
Min TPM: 30.6
MONOCYTES_1
137.2
MONOCYTES_2
122.5
MONOCYTES_3
113.4
MONOCYTES_4
107.5
MONOCYTES_5
105.3
MONOCYTES_6
105.3
MONOCYTES_7
102.3
MONOCYTES_8
101.4
MONOCYTES_9
99.3
MONOCYTES_10
98.8
MONOCYTES_11
97.4
MONOCYTES_12
94.6
MONOCYTES_13
93.3
MONOCYTES_14
93.3
MONOCYTES_15
93.1
MONOCYTES_16
92.4
MONOCYTES_17
92.1
MONOCYTES_18
92.0
MONOCYTES_19
91.7
MONOCYTES_20
88.8
MONOCYTES_21
88.6
MONOCYTES_22
87.9
MONOCYTES_23
87.0
MONOCYTES_24
86.8
MONOCYTES_25
86.5
MONOCYTES_26
85.1
MONOCYTES_27
84.3
MONOCYTES_28
81.9
MONOCYTES_29
81.3
MONOCYTES_30
79.2
MONOCYTES_31
78.3
MONOCYTES_32
74.9
MONOCYTES_33
74.3
MONOCYTES_34
72.6
MONOCYTES_35
71.8
MONOCYTES_36
71.0
MONOCYTES_37
70.6
MONOCYTES_38
70.5
MONOCYTES_39
69.5
MONOCYTES_40
66.1
MONOCYTES_41
64.8
MONOCYTES_42
64.8
MONOCYTES_43
64.3
MONOCYTES_44
61.9
MONOCYTES_45
61.7
MONOCYTES_46
61.6
MONOCYTES_47
59.9
MONOCYTES_48
59.3
MONOCYTES_49
59.3
MONOCYTES_50
57.9
MONOCYTES_51
57.9
MONOCYTES_52
57.0
MONOCYTES_53
56.7
MONOCYTES_54
55.9
MONOCYTES_55
54.7
MONOCYTES_56
53.8
MONOCYTES_57
53.2
MONOCYTES_58
53.2
MONOCYTES_59
52.7
MONOCYTES_60
51.9
MONOCYTES_61
51.3
MONOCYTES_62
51.0
MONOCYTES_63
50.9
MONOCYTES_64
50.0
MONOCYTES_65
49.9
MONOCYTES_66
49.6
MONOCYTES_67
49.5
MONOCYTES_68
49.5
MONOCYTES_69
49.4
MONOCYTES_70
48.9
MONOCYTES_71
48.7
MONOCYTES_72
48.6
MONOCYTES_73
48.1
MONOCYTES_74
47.7
MONOCYTES_75
47.2
MONOCYTES_76
44.4
MONOCYTES_77
44.2
MONOCYTES_78
43.6
MONOCYTES_79
43.0
MONOCYTES_80
40.5
MONOCYTES_81
40.2
MONOCYTES_82
38.5
MONOCYTES_83
38.2
MONOCYTES_84
35.5
MONOCYTES_85
35.0
MONOCYTES_86
34.9
MONOCYTES_87
34.7
MONOCYTES_88
33.9
MONOCYTES_89
33.5
MONOCYTES_90
32.2
MONOCYTES_91
30.6
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Non-classical monocyte TPM: 60.0
Samples: 90
Max TPM: 113.9
Min TPM: 19.4
M2_1
113.9
M2_2
111.0
M2_3
106.9
M2_4
106.8
M2_5
103.2
M2_6
99.8
M2_7
97.4
M2_8
94.0
M2_9
93.8
M2_10
92.4
M2_11
91.7
M2_12
89.2
M2_13
88.2
M2_14
86.6
M2_15
85.5
M2_16
85.0
M2_17
84.2
M2_18
82.3
M2_19
82.2
M2_20
79.2
M2_21
78.8
M2_22
78.3
M2_23
75.1
M2_24
74.6
M2_25
72.4
M2_26
72.1
M2_27
70.1
M2_28
69.2
M2_29
68.9
M2_30
67.4
M2_31
67.2
M2_32
67.0
M2_33
66.9
M2_34
66.5
M2_35
66.4
M2_36
65.0
M2_37
64.4
M2_38
63.7
M2_39
63.5
M2_40
61.6
M2_41
61.2
M2_42
60.3
M2_43
59.6
M2_44
59.4
M2_45
59.1
M2_46
58.4
M2_47
58.2
M2_48
57.5
M2_49
56.8
M2_50
56.1
M2_51
55.2
M2_52
53.1
M2_53
52.4
M2_54
51.4
M2_55
51.3
M2_56
51.3
M2_57
51.0
M2_58
50.9
M2_59
50.8
M2_60
50.2
M2_61
48.9
M2_62
47.4
M2_63
45.8
M2_64
45.3
M2_65
45.3
M2_66
44.9
M2_67
44.5
M2_68
44.4
M2_69
41.3
M2_70
39.1
M2_71
39.0
M2_72
37.4
M2_73
34.9
M2_74
34.0
M2_75
33.5
M2_76
33.2
M2_77
32.2
M2_78
31.4
M2_79
31.3
M2_80
31.2
M2_81
30.2
M2_82
29.9
M2_83
29.7
M2_84
27.9
M2_85
27.8
M2_86
27.8
M2_87
23.6
M2_88
23.5
M2_89
21.1
M2_90
19.4
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