A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.3
nTPM
Monaco:
58.0
nTPM
Schmiedel:
21.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.3
HPA sample
nTPM
Classical monocyte nTPM: 2.3
Samples: 6
Max nTPM: 3.5
Min nTPM: 0.6
P10809_1003
3.5
P10809_1020
0.6
P10809_1039
2.6
P10809_1058
3.3
P10809_1080
2.9
P10809_1107
1.0
Intermediate monocyte nTPM: 3.6
Samples: 6
Max nTPM: 5.7
Min nTPM: 0.6
P10809_1004
3.3
P10809_1023
0.6
P10809_1042
5.6
P10809_1061
4.0
P10809_1081
5.7
P10809_1108
2.3
Non-classical monocyte nTPM: 17.3
Samples: 5
Max nTPM: 45.6
Min nTPM: 4.6
P10809_1005
10.3
P10809_1053
9.2
P10809_1072
45.6
P10809_1082
16.7
P10809_1109
4.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.0
Monaco sample
nTPM
Classical monocyte nTPM: 12.8
Samples: 4
Max nTPM: 17.0
Min nTPM: 9.7
RHH5313_R3680
17.0
RHH5221_R3593
13.5
RHH5250_R3622
11.1
RHH5279_R3651
9.7
Intermediate monocyte nTPM: 23.5
Samples: 4
Max nTPM: 35.9
Min nTPM: 15.5
RHH5314_R3681
35.9
RHH5222_R3594
24.9
RHH5251_R3623
17.7
RHH5280_R3652
15.5
Non-classical monocyte nTPM: 58.1
Samples: 4
Max nTPM: 109.6
Min nTPM: 36.1
RHH5315_R3682
109.6
RHH5223_R3595
39.2
RHH5252_R3624
47.3
RHH5281_R3653
36.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.3
Schmiedel sample id
TPM
Classical monocyte TPM: 2.8
Samples: 91
Max TPM: 9.8
Min TPM: 0.8
MONOCYTES_1
9.8
MONOCYTES_2
9.1
MONOCYTES_3
6.6
MONOCYTES_4
6.0
MONOCYTES_5
5.8
MONOCYTES_6
5.2
MONOCYTES_7
4.7
MONOCYTES_8
4.4
MONOCYTES_9
4.4
MONOCYTES_10
4.3
MONOCYTES_11
4.3
MONOCYTES_12
4.3
MONOCYTES_13
4.2
MONOCYTES_14
4.0
MONOCYTES_15
3.8
MONOCYTES_16
3.8
MONOCYTES_17
3.7
MONOCYTES_18
3.7
MONOCYTES_19
3.6
MONOCYTES_20
3.5
MONOCYTES_21
3.4
MONOCYTES_22
3.3
MONOCYTES_23
3.3
MONOCYTES_24
3.2
MONOCYTES_25
3.2
MONOCYTES_26
3.1
MONOCYTES_27
3.1
MONOCYTES_28
3.1
MONOCYTES_29
3.0
MONOCYTES_30
3.0
MONOCYTES_31
3.0
MONOCYTES_32
2.9
MONOCYTES_33
2.9
MONOCYTES_34
2.9
MONOCYTES_35
2.9
MONOCYTES_36
2.9
MONOCYTES_37
2.8
MONOCYTES_38
2.8
MONOCYTES_39
2.8
MONOCYTES_40
2.8
MONOCYTES_41
2.7
MONOCYTES_42
2.7
MONOCYTES_43
2.7
MONOCYTES_44
2.7
MONOCYTES_45
2.7
MONOCYTES_46
2.7
MONOCYTES_47
2.7
MONOCYTES_48
2.6
MONOCYTES_49
2.5
MONOCYTES_50
2.5
MONOCYTES_51
2.3
MONOCYTES_52
2.3
MONOCYTES_53
2.2
MONOCYTES_54
2.2
MONOCYTES_55
2.2
MONOCYTES_56
2.2
MONOCYTES_57
2.2
MONOCYTES_58
2.2
MONOCYTES_59
2.1
MONOCYTES_60
2.1
MONOCYTES_61
2.1
MONOCYTES_62
2.1
MONOCYTES_63
2.1
MONOCYTES_64
2.0
MONOCYTES_65
2.0
MONOCYTES_66
2.0
MONOCYTES_67
2.0
MONOCYTES_68
1.9
MONOCYTES_69
1.9
MONOCYTES_70
1.8
MONOCYTES_71
1.7
MONOCYTES_72
1.7
MONOCYTES_73
1.7
MONOCYTES_74
1.7
MONOCYTES_75
1.6
MONOCYTES_76
1.6
MONOCYTES_77
1.6
MONOCYTES_78
1.6
MONOCYTES_79
1.5
MONOCYTES_80
1.4
MONOCYTES_81
1.4
MONOCYTES_82
1.4
MONOCYTES_83
1.3
MONOCYTES_84
1.3
MONOCYTES_85
1.3
MONOCYTES_86
1.3
MONOCYTES_87
1.1
MONOCYTES_88
1.1
MONOCYTES_89
1.1
MONOCYTES_90
1.0
MONOCYTES_91
0.8
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Non-classical monocyte TPM: 21.3
Samples: 90
Max TPM: 57.2
Min TPM: 6.4
M2_1
57.2
M2_2
55.0
M2_3
52.4
M2_4
49.9
M2_5
49.2
M2_6
47.8
M2_7
46.4
M2_8
44.0
M2_9
42.8
M2_10
42.5
M2_11
39.9
M2_12
36.4
M2_13
33.2
M2_14
32.9
M2_15
29.4
M2_16
29.4
M2_17
28.5
M2_18
28.4
M2_19
27.9
M2_20
27.6
M2_21
27.1
M2_22
26.3
M2_23
26.1
M2_24
26.0
M2_25
25.6
M2_26
25.5
M2_27
25.4
M2_28
25.1
M2_29
24.1
M2_30
23.4
M2_31
23.4
M2_32
22.8
M2_33
21.7
M2_34
21.7
M2_35
21.2
M2_36
20.8
M2_37
20.1
M2_38
19.9
M2_39
19.0
M2_40
18.7
M2_41
18.6
M2_42
18.6
M2_43
18.4
M2_44
18.0
M2_45
17.9
M2_46
17.7
M2_47
17.1
M2_48
16.6
M2_49
16.3
M2_50
16.0
M2_51
15.9
M2_52
15.9
M2_53
15.9
M2_54
15.9
M2_55
15.8
M2_56
15.8
M2_57
15.3
M2_58
15.2
M2_59
14.9
M2_60
14.7
M2_61
14.6
M2_62
14.5
M2_63
14.4
M2_64
14.0
M2_65
13.7
M2_66
13.4
M2_67
12.8
M2_68
12.5
M2_69
12.2
M2_70
12.0
M2_71
11.8
M2_72
11.7
M2_73
11.4
M2_74
11.0
M2_75
10.7
M2_76
10.5
M2_77
9.4
M2_78
9.4
M2_79
9.3
M2_80
9.1
M2_81
9.0
M2_82
8.7
M2_83
8.6
M2_84
8.6
M2_85
8.4
M2_86
7.7
M2_87
7.6
M2_88
7.4
M2_89
7.0
M2_90
6.4
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