A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.4
nTPM
Monaco:
29.3
nTPM
Schmiedel:
28.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.4
HPA sample
nTPM
Classical monocyte nTPM: 1.4
Samples: 6
Max nTPM: 5.1
Min nTPM: 0.4
P10809_1003
5.1
P10809_1020
0.7
P10809_1039
0.4
P10809_1058
0.4
P10809_1080
0.8
P10809_1107
1.1
Intermediate monocyte nTPM: 0.5
Samples: 6
Max nTPM: 1.7
Min nTPM: 0.0
P10809_1004
1.7
P10809_1023
0.2
P10809_1042
0.1
P10809_1061
0.0
P10809_1081
0.7
P10809_1108
0.3
Non-classical monocyte nTPM: 0.5
Samples: 5
Max nTPM: 1.4
Min nTPM: 0.0
P10809_1005
1.4
P10809_1053
0.4
P10809_1072
0.0
P10809_1082
0.5
P10809_1109
0.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.3
Monaco sample
nTPM
Classical monocyte nTPM: 29.2
Samples: 4
Max nTPM: 35.8
Min nTPM: 18.3
RHH5313_R3680
34.8
RHH5221_R3593
35.8
RHH5250_R3622
28.1
RHH5279_R3651
18.3
Intermediate monocyte nTPM: 14.7
Samples: 4
Max nTPM: 22.4
Min nTPM: 7.2
RHH5314_R3681
22.4
RHH5222_R3594
17.0
RHH5251_R3623
12.2
RHH5280_R3652
7.2
Non-classical monocyte nTPM: 14.0
Samples: 4
Max nTPM: 20.8
Min nTPM: 9.6
RHH5315_R3682
20.8
RHH5223_R3595
9.6
RHH5252_R3624
12.4
RHH5281_R3653
13.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.6
Schmiedel sample id
TPM
Classical monocyte TPM: 28.6
Samples: 91
Max TPM: 44.1
Min TPM: 15.2
MONOCYTES_1
44.1
MONOCYTES_2
44.1
MONOCYTES_3
43.1
MONOCYTES_4
42.4
MONOCYTES_5
41.5
MONOCYTES_6
40.8
MONOCYTES_7
40.7
MONOCYTES_8
40.1
MONOCYTES_9
39.8
MONOCYTES_10
39.7
MONOCYTES_11
39.5
MONOCYTES_12
38.9
MONOCYTES_13
38.3
MONOCYTES_14
37.3
MONOCYTES_15
37.0
MONOCYTES_16
36.1
MONOCYTES_17
35.9
MONOCYTES_18
35.6
MONOCYTES_19
35.4
MONOCYTES_20
34.9
MONOCYTES_21
34.9
MONOCYTES_22
34.8
MONOCYTES_23
34.4
MONOCYTES_24
33.9
MONOCYTES_25
33.8
MONOCYTES_26
33.2
MONOCYTES_27
32.9
MONOCYTES_28
31.9
MONOCYTES_29
31.6
MONOCYTES_30
31.2
MONOCYTES_31
31.2
MONOCYTES_32
31.1
MONOCYTES_33
30.8
MONOCYTES_34
30.6
MONOCYTES_35
30.5
MONOCYTES_36
30.1
MONOCYTES_37
30.0
MONOCYTES_38
29.7
MONOCYTES_39
29.0
MONOCYTES_40
28.9
MONOCYTES_41
28.6
MONOCYTES_42
28.3
MONOCYTES_43
28.2
MONOCYTES_44
28.2
MONOCYTES_45
28.0
MONOCYTES_46
27.9
MONOCYTES_47
27.9
MONOCYTES_48
27.7
MONOCYTES_49
27.1
MONOCYTES_50
27.0
MONOCYTES_51
26.7
MONOCYTES_52
26.3
MONOCYTES_53
26.2
MONOCYTES_54
26.1
MONOCYTES_55
26.1
MONOCYTES_56
26.1
MONOCYTES_57
25.7
MONOCYTES_58
25.4
MONOCYTES_59
25.3
MONOCYTES_60
24.9
MONOCYTES_61
24.6
MONOCYTES_62
24.3
MONOCYTES_63
24.3
MONOCYTES_64
24.2
MONOCYTES_65
24.2
MONOCYTES_66
23.9
MONOCYTES_67
23.8
MONOCYTES_68
23.5
MONOCYTES_69
23.4
MONOCYTES_70
23.2
MONOCYTES_71
22.7
MONOCYTES_72
22.7
MONOCYTES_73
22.6
MONOCYTES_74
22.6
MONOCYTES_75
22.5
MONOCYTES_76
21.8
MONOCYTES_77
20.5
MONOCYTES_78
20.2
MONOCYTES_79
19.9
MONOCYTES_80
19.9
MONOCYTES_81
19.8
MONOCYTES_82
19.0
MONOCYTES_83
19.0
MONOCYTES_84
18.7
MONOCYTES_85
18.5
MONOCYTES_86
17.8
MONOCYTES_87
17.6
MONOCYTES_88
16.0
MONOCYTES_89
15.8
MONOCYTES_90
15.3
MONOCYTES_91
15.2
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Non-classical monocyte TPM: 13.3
Samples: 90
Max TPM: 25.7
Min TPM: 5.4
M2_1
25.7
M2_2
25.4
M2_3
20.5
M2_4
18.9
M2_5
18.8
M2_6
18.7
M2_7
18.7
M2_8
18.6
M2_9
17.9
M2_10
17.6
M2_11
17.0
M2_12
16.9
M2_13
16.8
M2_14
16.6
M2_15
16.6
M2_16
16.5
M2_17
16.5
M2_18
16.3
M2_19
16.2
M2_20
16.2
M2_21
16.1
M2_22
16.1
M2_23
16.0
M2_24
15.9
M2_25
15.8
M2_26
15.7
M2_27
15.7
M2_28
15.6
M2_29
15.5
M2_30
15.5
M2_31
15.4
M2_32
15.4
M2_33
15.2
M2_34
15.2
M2_35
15.2
M2_36
15.1
M2_37
14.9
M2_38
14.6
M2_39
14.5
M2_40
14.5
M2_41
14.4
M2_42
14.4
M2_43
14.2
M2_44
13.9
M2_45
13.8
M2_46
13.8
M2_47
13.7
M2_48
13.6
M2_49
13.3
M2_50
13.1
M2_51
13.0
M2_52
13.0
M2_53
12.8
M2_54
12.7
M2_55
12.4
M2_56
12.4
M2_57
12.3
M2_58
12.3
M2_59
11.9
M2_60
11.7
M2_61
11.5
M2_62
11.4
M2_63
11.3
M2_64
11.3
M2_65
11.3
M2_66
10.8
M2_67
10.8
M2_68
10.2
M2_69
9.9
M2_70
9.6
M2_71
9.5
M2_72
9.4
M2_73
9.2
M2_74
9.1
M2_75
8.9
M2_76
8.5
M2_77
8.4
M2_78
8.3
M2_79
8.2
M2_80
8.2
M2_81
8.2
M2_82
7.3
M2_83
7.1
M2_84
6.9
M2_85
6.2
M2_86
6.1
M2_87
6.0
M2_88
5.9
M2_89
5.5
M2_90
5.4
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