A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
4.1
nTPM
Monaco:
19.7
nTPM
Schmiedel:
25.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
4.1
HPA sample
nTPM
Classical monocyte nTPM: 4.1
Samples: 6
Max nTPM: 5.1
Min nTPM: 3.0
P10809_1003
3.0
P10809_1020
3.6
P10809_1039
4.3
P10809_1058
4.5
P10809_1080
4.2
P10809_1107
5.1
Intermediate monocyte nTPM: 2.7
Samples: 6
Max nTPM: 5.3
Min nTPM: 1.0
P10809_1004
5.3
P10809_1023
1.0
P10809_1042
2.3
P10809_1061
2.3
P10809_1081
3.7
P10809_1108
1.9
Non-classical monocyte nTPM: 3.5
Samples: 5
Max nTPM: 5.9
Min nTPM: 0.0
P10809_1005
5.9
P10809_1053
2.7
P10809_1072
0.0
P10809_1082
4.2
P10809_1109
4.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.7
Monaco sample
nTPM
Classical monocyte nTPM: 15.2
Samples: 4
Max nTPM: 22.8
Min nTPM: 12.0
RHH5313_R3680
12.3
RHH5221_R3593
22.8
RHH5250_R3622
13.6
RHH5279_R3651
12.0
Intermediate monocyte nTPM: 17.1
Samples: 4
Max nTPM: 22.6
Min nTPM: 14.0
RHH5314_R3681
15.1
RHH5222_R3594
22.6
RHH5251_R3623
14.0
RHH5280_R3652
16.8
Non-classical monocyte nTPM: 19.7
Samples: 4
Max nTPM: 27.3
Min nTPM: 11.0
RHH5315_R3682
22.2
RHH5223_R3595
27.3
RHH5252_R3624
18.4
RHH5281_R3653
11.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.4
Schmiedel sample id
TPM
Classical monocyte TPM: 21.2
Samples: 91
Max TPM: 26.1
Min TPM: 15.1
MONOCYTES_1
26.1
MONOCYTES_2
25.9
MONOCYTES_3
25.9
MONOCYTES_4
25.4
MONOCYTES_5
24.9
MONOCYTES_6
24.8
MONOCYTES_7
24.7
MONOCYTES_8
24.6
MONOCYTES_9
24.1
MONOCYTES_10
23.9
MONOCYTES_11
23.9
MONOCYTES_12
23.8
MONOCYTES_13
23.5
MONOCYTES_14
23.5
MONOCYTES_15
23.4
MONOCYTES_16
23.4
MONOCYTES_17
23.4
MONOCYTES_18
23.3
MONOCYTES_19
23.2
MONOCYTES_20
23.1
MONOCYTES_21
22.9
MONOCYTES_22
22.8
MONOCYTES_23
22.8
MONOCYTES_24
22.7
MONOCYTES_25
22.5
MONOCYTES_26
22.5
MONOCYTES_27
22.5
MONOCYTES_28
22.2
MONOCYTES_29
22.2
MONOCYTES_30
22.2
MONOCYTES_31
22.1
MONOCYTES_32
22.0
MONOCYTES_33
22.0
MONOCYTES_34
21.9
MONOCYTES_35
21.9
MONOCYTES_36
21.8
MONOCYTES_37
21.8
MONOCYTES_38
21.8
MONOCYTES_39
21.7
MONOCYTES_40
21.6
MONOCYTES_41
21.6
MONOCYTES_42
21.6
MONOCYTES_43
21.4
MONOCYTES_44
21.4
MONOCYTES_45
21.4
MONOCYTES_46
21.4
MONOCYTES_47
21.3
MONOCYTES_48
21.2
MONOCYTES_49
21.1
MONOCYTES_50
21.0
MONOCYTES_51
20.9
MONOCYTES_52
20.9
MONOCYTES_53
20.8
MONOCYTES_54
20.7
MONOCYTES_55
20.7
MONOCYTES_56
20.6
MONOCYTES_57
20.4
MONOCYTES_58
20.3
MONOCYTES_59
20.3
MONOCYTES_60
20.3
MONOCYTES_61
20.2
MONOCYTES_62
20.1
MONOCYTES_63
20.1
MONOCYTES_64
20.0
MONOCYTES_65
19.9
MONOCYTES_66
19.9
MONOCYTES_67
19.9
MONOCYTES_68
19.8
MONOCYTES_69
19.8
MONOCYTES_70
19.7
MONOCYTES_71
19.7
MONOCYTES_72
19.6
MONOCYTES_73
19.5
MONOCYTES_74
19.4
MONOCYTES_75
19.1
MONOCYTES_76
19.1
MONOCYTES_77
19.0
MONOCYTES_78
18.8
MONOCYTES_79
18.6
MONOCYTES_80
18.5
MONOCYTES_81
18.3
MONOCYTES_82
18.3
MONOCYTES_83
18.2
MONOCYTES_84
18.2
MONOCYTES_85
18.0
MONOCYTES_86
18.0
MONOCYTES_87
17.9
MONOCYTES_88
17.5
MONOCYTES_89
17.2
MONOCYTES_90
16.8
MONOCYTES_91
15.1
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Non-classical monocyte TPM: 25.4
Samples: 90
Max TPM: 33.4
Min TPM: 19.9
M2_1
33.4
M2_2
29.4
M2_3
29.4
M2_4
29.4
M2_5
29.3
M2_6
29.2
M2_7
29.2
M2_8
29.1
M2_9
28.7
M2_10
28.5
M2_11
28.4
M2_12
28.1
M2_13
28.1
M2_14
27.9
M2_15
27.8
M2_16
27.8
M2_17
27.8
M2_18
27.6
M2_19
27.5
M2_20
27.5
M2_21
27.3
M2_22
27.3
M2_23
27.2
M2_24
26.9
M2_25
26.9
M2_26
26.9
M2_27
26.8
M2_28
26.7
M2_29
26.7
M2_30
26.7
M2_31
26.6
M2_32
26.5
M2_33
26.5
M2_34
26.5
M2_35
26.5
M2_36
26.4
M2_37
26.4
M2_38
26.4
M2_39
26.1
M2_40
26.0
M2_41
26.0
M2_42
25.9
M2_43
25.9
M2_44
25.7
M2_45
25.6
M2_46
25.5
M2_47
25.5
M2_48
25.3
M2_49
25.2
M2_50
25.2
M2_51
25.0
M2_52
25.0
M2_53
24.9
M2_54
24.8
M2_55
24.8
M2_56
24.8
M2_57
24.5
M2_58
24.5
M2_59
24.5
M2_60
24.4
M2_61
24.4
M2_62
24.3
M2_63
24.2
M2_64
24.2
M2_65
24.0
M2_66
24.0
M2_67
23.9
M2_68
23.9
M2_69
23.7
M2_70
23.3
M2_71
23.2
M2_72
23.0
M2_73
23.0
M2_74
22.8
M2_75
22.8
M2_76
22.7
M2_77
22.6
M2_78
22.1
M2_79
21.8
M2_80
21.7
M2_81
21.6
M2_82
21.6
M2_83
21.4
M2_84
21.2
M2_85
21.0
M2_86
20.9
M2_87
20.9
M2_88
20.5
M2_89
20.4
M2_90
19.9
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