MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.7 nTPM
HPA Brain:144.4 nTPM
GTEx:79.7 nTPM
FANTOM5:24.0 Scaled Tags Per Million
Pig:55.0 nTPM
Mouse:67.9 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 144.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 133.6
2586 Male, age 75, left hemisphere 184.5
2219 Male, age 76, both hemispheres 152.5
1827 Male, age 72, unknown 137.8
2666 Male, age 74, left hemisphere 137.3
2828 Female, age 72, unknown 134.4
1833 Male, age 53, unknown 130.0
2411 Female, age 72, unknown 116.2
2019 Male, age 18, unknown 114.7
1830 Male, age 51, unknown 114.4
1870 Female, age 42, unknown 113.8
Dorsal raphe nucleus
nTPM: 120.0
2047 Male, age 72, unknown 133.6
1828 Male, age 53, unknown 128.1
2750 Male, age 76, both hemispheres 113.5
2298 Female, age 72, unknown 112.4
2016 Female, age 72, unknown 112.3
Inferior colliculus
nTPM: 121.1
2849 Male, age 72, unknown 143.1
1848 Female, age 42, unknown 123.9
1890 Male, age 53, unknown 114.0
2097 Female, age 72, unknown 103.3
Median raphe nucleus
nTPM: 109.8
2220 Male, age 76, midline 109.8
Periaquaductal grey, anterior
nTPM: 144.4
2502 Female, age 75, unknown 172.1
1795 Male, age 51, unknown 133.7
1947 Male, age 18, unknown 127.4
Periaquaductal grey, dorsal
nTPM: 113.5
2464 Female, age 72, unknown 128.5
1840 Male, age 53, unknown 120.3
2850 Male, age 76, both hemispheres 105.6
1831 Male, age 72, unknown 99.5
Periaquaductal grey, lateral
nTPM: 106.5
2140 Male, age 76, both hemispheres 114.8
2053 Male, age 18, unknown 106.4
2272 Male, age 74, both hemispheres 98.1
Pretectal area
nTPM: 119.9
1816 Male, age 51, unknown 134.5
2667 Female, age 75, unknown 134.0
2007 Male, age 72, unknown 133.8
2825 Male, age 18, unknown 131.0
2407 Male, age 75, both hemispheres 124.6
2316 Male, age 76, right hemisphere 123.9
1944 Female, age 72, unknown 117.7
1817 Female, age 42, unknown 117.6
2224 Female, age 72, unknown 111.5
1815 Male, age 53, unknown 110.3
2273 Male, age 74, both hemispheres 80.0
Red nucleus
nTPM: 118.3
2588 Male, age 74, left hemisphere 157.8
2584 Male, age 75, left hemisphere 151.2
2769 Male, age 72, unknown 135.2
2227 Male, age 72, unknown 124.2
2785 Male, age 18, unknown 121.0
2823 Male, age 76, right hemisphere 119.8
1904 Male, age 53, unknown 107.4
1954 Female, age 42, unknown 105.2
2503 Female, age 72, unknown 105.1
2725 Female, age 75, unknown 98.5
1865 Male, age 51, unknown 97.9
1821 Female, age 72, unknown 96.5
Substantia nigra
nTPM: 134.1
2665 Male, age 74, both hemispheres 198.8
2699 Male, age 18, unknown 155.8
1941 Male, age 53, unknown 148.4
1916 Female, age 42, unknown 137.4
1851 Male, age 51, unknown 135.2
2583 Male, age 75, right hemisphere 131.0
1889 Female, age 72, unknown 117.3
2590 Female, age 75, unknown 114.0
2241 Male, age 72, unknown 103.5
2409 Female, age 72, unknown 99.6
Superior colliculus
nTPM: 122.9
2664 Male, age 75, both hemispheres 175.5
1839 Male, age 51, unknown 130.4
2087 Female, age 72, unknown 127.4
1796 Male, age 53, unknown 126.6
1895 Male, age 76, right hemisphere 123.8
2668 Female, age 75, unknown 122.1
2587 Male, age 74, left hemisphere 117.3
2261 Male, age 18, unknown 115.5
1913 Female, age 42, unknown 99.3
1995 Male, age 72, unknown 90.7
Ventral tegmental area
nTPM: 118.5
1942 Male, age 51, unknown 138.8
2218 Male, age 76, both hemispheres 120.3
1915 Female, age 42, unknown 120.1
2410 Female, age 72, unknown 115.3
2021 Male, age 53, unknown 109.9
2223 Female, age 72, unknown 106.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 79.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 79.7
Samples: 183

Max nTPM: 155.2
Min nTPM: 29.1
Std nTPM: 25.4
Median nTPM: 78.7
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 155.2
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 147.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 142.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 139.4
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 137.2
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 132.2
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 131.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 128.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 124.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 121.0
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 120.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.0
FF:10158-103A5 76 years, female 24.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 55.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.4
Samples: 4

Max nTPM: 60.5
Min nTPM: 39.9
Sample A Female 59.9
Sample B Female 39.9
Sample C Male 60.5
Sample D Male 57.4
Midbrain
nTPM: 55.1
Samples: 4

Max nTPM: 62.2
Min nTPM: 50.1
Sample A Female 62.2
Sample B Female 53.1
Sample C Male 50.1
Sample D Male 54.8
Periaqueductal gray
nTPM: 49.6
Samples: 3

Max nTPM: 54.7
Min nTPM: 43.8
Sample B Female 50.3
Sample C Male 54.7
Sample D Male 43.8
Superior colliculi
nTPM: 54.6
Samples: 4

Max nTPM: 64.1
Min nTPM: 36.0
Sample A Female 60.7
Sample B Female 36.0
Sample C Male 57.6
Sample D Male 64.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 67.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 68.0
Samples: 4

Max nTPM: 71.4
Min nTPM: 63.6
Sample A Male 71.4
Sample B Male 63.6
Sample C Female 69.5
Sample D Female 67.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
74056144 Antisense, RP_051019_03_E12, Mouse strain C57BL/6J (56 days, male) 0.5

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