A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.9
nTPM
Monaco:
31.3
nTPM
Schmiedel:
34.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.9
HPA sample
nTPM
NK-cell nTPM: 1.9
Samples: 6
Max nTPM: 3.2
Min nTPM: 0.0
P10809_1013
3.2
P10809_1033
2.5
P10809_1052
1.7
P10809_1071
2.0
P10809_1093
0.0
P10809_1103
2.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.3
Monaco sample
nTPM
NK-cell nTPM: 31.3
Samples: 4
Max nTPM: 39.1
Min nTPM: 25.5
RHH5316_R3683
29.6
RHH5224_R3596
25.5
RHH5253_R3625
39.1
RHH5282_R3654
31.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
34.4
Schmiedel sample id
TPM
NK-cell TPM: 34.4
Samples: 90
Max TPM: 52.6
Min TPM: 19.0
NK_1
52.6
NK_2
51.7
NK_3
50.8
NK_4
47.8
NK_5
47.3
NK_6
47.2
NK_7
46.8
NK_8
46.5
NK_9
45.7
NK_10
45.3
NK_11
44.2
NK_12
44.1
NK_13
44.0
NK_14
42.8
NK_15
41.4
NK_16
40.5
NK_17
40.4
NK_18
40.1
NK_19
40.0
NK_20
39.7
NK_21
38.9
NK_22
38.6
NK_23
38.4
NK_24
38.2
NK_25
38.2
NK_26
38.0
NK_27
37.9
NK_28
37.1
NK_29
37.1
NK_30
37.1
NK_31
36.9
NK_32
36.8
NK_33
36.6
NK_34
36.4
NK_35
36.3
NK_36
36.3
NK_37
36.0
NK_38
35.5
NK_39
35.2
NK_40
35.1
NK_41
34.3
NK_42
34.0
NK_43
33.8
NK_44
33.7
NK_45
33.4
NK_46
33.3
NK_47
33.2
NK_48
33.1
NK_49
33.0
NK_50
32.8
NK_51
32.8
NK_52
32.7
NK_53
32.5
NK_54
32.5
NK_55
32.0
NK_56
32.0
NK_57
31.8
NK_58
31.3
NK_59
31.2
NK_60
31.0
NK_61
31.0
NK_62
30.3
NK_63
30.3
NK_64
30.2
NK_65
29.8
NK_66
29.8
NK_67
29.8
NK_68
29.5
NK_69
29.2
NK_70
29.2
NK_71
28.5
NK_72
28.3
NK_73
28.3
NK_74
28.1
NK_75
27.4
NK_76
27.1
NK_77
26.6
NK_78
26.5
NK_79
24.9
NK_80
24.6
NK_81
24.6
NK_82
24.5
NK_83
24.5
NK_84
24.2
NK_85
24.2
NK_86
24.0
NK_87
23.8
NK_88
23.4
NK_89
20.6
NK_90
19.0
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