A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
45.7
nTPM
Monaco:
124.8
nTPM
Schmiedel:
69.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.7
HPA sample
nTPM
Classical monocyte nTPM: 38.3
Samples: 6
Max nTPM: 50.7
Min nTPM: 30.6
P10809_1003
33.8
P10809_1020
41.6
P10809_1039
50.7
P10809_1058
30.6
P10809_1080
40.5
P10809_1107
32.4
Intermediate monocyte nTPM: 41.0
Samples: 6
Max nTPM: 52.1
Min nTPM: 29.8
P10809_1004
44.0
P10809_1023
52.1
P10809_1042
45.2
P10809_1061
40.2
P10809_1081
29.8
P10809_1108
34.8
Non-classical monocyte nTPM: 45.7
Samples: 5
Max nTPM: 62.6
Min nTPM: 35.0
P10809_1005
36.4
P10809_1053
62.6
P10809_1072
55.4
P10809_1082
35.0
P10809_1109
39.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
124.8
Monaco sample
nTPM
Classical monocyte nTPM: 108.7
Samples: 4
Max nTPM: 160.3
Min nTPM: 88.1
RHH5313_R3680
93.2
RHH5221_R3593
160.3
RHH5250_R3622
88.1
RHH5279_R3651
93.0
Intermediate monocyte nTPM: 105.1
Samples: 4
Max nTPM: 146.7
Min nTPM: 81.5
RHH5314_R3681
81.5
RHH5222_R3594
146.7
RHH5251_R3623
99.9
RHH5280_R3652
92.4
Non-classical monocyte nTPM: 124.8
Samples: 4
Max nTPM: 187.2
Min nTPM: 101.2
RHH5315_R3682
102.4
RHH5223_R3595
187.2
RHH5252_R3624
101.2
RHH5281_R3653
108.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
69.8
Schmiedel sample id
TPM
Classical monocyte TPM: 53.5
Samples: 91
Max TPM: 74.2
Min TPM: 37.7
MONOCYTES_1
74.2
MONOCYTES_2
68.6
MONOCYTES_3
67.3
MONOCYTES_4
63.3
MONOCYTES_5
63.1
MONOCYTES_6
62.8
MONOCYTES_7
62.4
MONOCYTES_8
62.1
MONOCYTES_9
62.1
MONOCYTES_10
61.7
MONOCYTES_11
61.2
MONOCYTES_12
61.1
MONOCYTES_13
60.2
MONOCYTES_14
59.8
MONOCYTES_15
59.7
MONOCYTES_16
59.3
MONOCYTES_17
59.2
MONOCYTES_18
58.9
MONOCYTES_19
58.8
MONOCYTES_20
58.5
MONOCYTES_21
58.3
MONOCYTES_22
58.0
MONOCYTES_23
58.0
MONOCYTES_24
57.8
MONOCYTES_25
57.4
MONOCYTES_26
57.2
MONOCYTES_27
57.1
MONOCYTES_28
57.0
MONOCYTES_29
56.5
MONOCYTES_30
56.4
MONOCYTES_31
55.5
MONOCYTES_32
55.4
MONOCYTES_33
55.3
MONOCYTES_34
55.3
MONOCYTES_35
54.9
MONOCYTES_36
54.8
MONOCYTES_37
54.8
MONOCYTES_38
54.7
MONOCYTES_39
54.5
MONOCYTES_40
54.3
MONOCYTES_41
54.1
MONOCYTES_42
54.0
MONOCYTES_43
53.9
MONOCYTES_44
53.8
MONOCYTES_45
53.6
MONOCYTES_46
53.5
MONOCYTES_47
53.3
MONOCYTES_48
52.9
MONOCYTES_49
52.8
MONOCYTES_50
52.7
MONOCYTES_51
52.5
MONOCYTES_52
52.2
MONOCYTES_53
52.2
MONOCYTES_54
52.2
MONOCYTES_55
51.7
MONOCYTES_56
51.5
MONOCYTES_57
51.3
MONOCYTES_58
51.2
MONOCYTES_59
50.9
MONOCYTES_60
50.9
MONOCYTES_61
50.7
MONOCYTES_62
50.2
MONOCYTES_63
49.9
MONOCYTES_64
49.9
MONOCYTES_65
49.6
MONOCYTES_66
49.5
MONOCYTES_67
49.3
MONOCYTES_68
49.2
MONOCYTES_69
49.1
MONOCYTES_70
49.0
MONOCYTES_71
48.9
MONOCYTES_72
48.9
MONOCYTES_73
48.7
MONOCYTES_74
48.6
MONOCYTES_75
47.9
MONOCYTES_76
47.6
MONOCYTES_77
47.5
MONOCYTES_78
47.4
MONOCYTES_79
47.2
MONOCYTES_80
46.9
MONOCYTES_81
46.7
MONOCYTES_82
46.4
MONOCYTES_83
46.2
MONOCYTES_84
45.4
MONOCYTES_85
43.4
MONOCYTES_86
43.0
MONOCYTES_87
41.9
MONOCYTES_88
41.5
MONOCYTES_89
41.4
MONOCYTES_90
40.8
MONOCYTES_91
37.7
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Non-classical monocyte TPM: 69.8
Samples: 90
Max TPM: 103.3
Min TPM: 50.0
M2_1
103.3
M2_2
101.8
M2_3
98.7
M2_4
97.2
M2_5
92.6
M2_6
92.0
M2_7
90.4
M2_8
90.2
M2_9
89.8
M2_10
89.7
M2_11
88.2
M2_12
84.7
M2_13
82.9
M2_14
82.6
M2_15
80.6
M2_16
80.3
M2_17
79.6
M2_18
78.5
M2_19
78.0
M2_20
77.5
M2_21
76.7
M2_22
75.6
M2_23
75.5
M2_24
75.0
M2_25
74.7
M2_26
74.4
M2_27
74.3
M2_28
73.9
M2_29
72.8
M2_30
72.7
M2_31
72.6
M2_32
71.3
M2_33
70.9
M2_34
70.8
M2_35
70.7
M2_36
70.7
M2_37
70.6
M2_38
70.2
M2_39
70.2
M2_40
69.5
M2_41
69.1
M2_42
69.0
M2_43
69.0
M2_44
68.5
M2_45
68.2
M2_46
67.8
M2_47
67.8
M2_48
67.4
M2_49
66.6
M2_50
66.1
M2_51
65.6
M2_52
65.3
M2_53
64.6
M2_54
64.5
M2_55
64.3
M2_56
64.1
M2_57
63.6
M2_58
63.2
M2_59
62.8
M2_60
62.6
M2_61
62.4
M2_62
62.2
M2_63
62.0
M2_64
61.9
M2_65
61.4
M2_66
61.4
M2_67
61.3
M2_68
61.3
M2_69
60.3
M2_70
60.3
M2_71
60.2
M2_72
59.9
M2_73
59.9
M2_74
59.5
M2_75
59.5
M2_76
59.5
M2_77
59.4
M2_78
59.3
M2_79
58.9
M2_80
58.8
M2_81
58.2
M2_82
58.0
M2_83
56.3
M2_84
55.4
M2_85
55.2
M2_86
55.0
M2_87
54.5
M2_88
51.0
M2_89
50.3
M2_90
50.0
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