A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.1
nTPM
Monaco:
43.2
nTPM
Schmiedel:
9.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.1
HPA sample
nTPM
Classical monocyte nTPM: 22.1
Samples: 6
Max nTPM: 34.3
Min nTPM: 10.6
P10809_1003
22.4
P10809_1020
30.4
P10809_1039
34.3
P10809_1058
10.6
P10809_1080
10.7
P10809_1107
24.5
Intermediate monocyte nTPM: 4.4
Samples: 6
Max nTPM: 8.7
Min nTPM: 0.2
P10809_1004
5.7
P10809_1023
6.1
P10809_1042
3.8
P10809_1061
0.2
P10809_1081
1.9
P10809_1108
8.7
Non-classical monocyte nTPM: 5.0
Samples: 5
Max nTPM: 8.6
Min nTPM: 2.3
P10809_1005
2.7
P10809_1053
3.1
P10809_1072
8.6
P10809_1082
2.3
P10809_1109
8.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.2
Monaco sample
nTPM
Classical monocyte nTPM: 43.2
Samples: 4
Max nTPM: 74.4
Min nTPM: 19.8
RHH5313_R3680
74.4
RHH5221_R3593
19.8
RHH5250_R3622
24.2
RHH5279_R3651
54.2
Intermediate monocyte nTPM: 12.0
Samples: 4
Max nTPM: 17.1
Min nTPM: 6.2
RHH5314_R3681
16.5
RHH5222_R3594
8.0
RHH5251_R3623
17.1
RHH5280_R3652
6.2
Non-classical monocyte nTPM: 6.0
Samples: 4
Max nTPM: 13.5
Min nTPM: 0.9
RHH5315_R3682
13.5
RHH5223_R3595
0.9
RHH5252_R3624
5.6
RHH5281_R3653
3.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.4
Schmiedel sample id
TPM
Classical monocyte TPM: 9.4
Samples: 91
Max TPM: 15.5
Min TPM: 4.6
MONOCYTES_1
15.5
MONOCYTES_2
14.4
MONOCYTES_3
13.3
MONOCYTES_4
13.2
MONOCYTES_5
12.7
MONOCYTES_6
12.7
MONOCYTES_7
12.5
MONOCYTES_8
12.3
MONOCYTES_9
12.3
MONOCYTES_10
12.0
MONOCYTES_11
12.0
MONOCYTES_12
11.9
MONOCYTES_13
11.9
MONOCYTES_14
11.8
MONOCYTES_15
11.7
MONOCYTES_16
11.6
MONOCYTES_17
11.6
MONOCYTES_18
11.1
MONOCYTES_19
11.1
MONOCYTES_20
11.0
MONOCYTES_21
11.0
MONOCYTES_22
10.7
MONOCYTES_23
10.7
MONOCYTES_24
10.7
MONOCYTES_25
10.5
MONOCYTES_26
10.4
MONOCYTES_27
10.4
MONOCYTES_28
10.2
MONOCYTES_29
10.2
MONOCYTES_30
10.1
MONOCYTES_31
10.1
MONOCYTES_32
10.0
MONOCYTES_33
10.0
MONOCYTES_34
9.9
MONOCYTES_35
9.8
MONOCYTES_36
9.8
MONOCYTES_37
9.7
MONOCYTES_38
9.6
MONOCYTES_39
9.5
MONOCYTES_40
9.4
MONOCYTES_41
9.4
MONOCYTES_42
9.3
MONOCYTES_43
9.2
MONOCYTES_44
9.2
MONOCYTES_45
9.1
MONOCYTES_46
9.1
MONOCYTES_47
9.1
MONOCYTES_48
9.1
MONOCYTES_49
9.0
MONOCYTES_50
9.0
MONOCYTES_51
8.9
MONOCYTES_52
8.9
MONOCYTES_53
8.8
MONOCYTES_54
8.8
MONOCYTES_55
8.8
MONOCYTES_56
8.8
MONOCYTES_57
8.7
MONOCYTES_58
8.6
MONOCYTES_59
8.6
MONOCYTES_60
8.5
MONOCYTES_61
8.5
MONOCYTES_62
8.5
MONOCYTES_63
8.4
MONOCYTES_64
8.3
MONOCYTES_65
8.2
MONOCYTES_66
8.2
MONOCYTES_67
8.2
MONOCYTES_68
8.2
MONOCYTES_69
8.1
MONOCYTES_70
8.1
MONOCYTES_71
7.9
MONOCYTES_72
7.8
MONOCYTES_73
7.8
MONOCYTES_74
7.8
MONOCYTES_75
7.8
MONOCYTES_76
7.7
MONOCYTES_77
7.4
MONOCYTES_78
7.4
MONOCYTES_79
7.3
MONOCYTES_80
7.1
MONOCYTES_81
7.1
MONOCYTES_82
7.1
MONOCYTES_83
7.0
MONOCYTES_84
7.0
MONOCYTES_85
7.0
MONOCYTES_86
6.9
MONOCYTES_87
6.7
MONOCYTES_88
5.6
MONOCYTES_89
5.1
MONOCYTES_90
5.1
MONOCYTES_91
4.6
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Non-classical monocyte TPM: 1.0
Samples: 90
Max TPM: 2.9
Min TPM: 0.2
M2_1
2.9
M2_2
2.8
M2_3
2.0
M2_4
1.6
M2_5
1.6
M2_6
1.6
M2_7
1.6
M2_8
1.5
M2_9
1.5
M2_10
1.5
M2_11
1.5
M2_12
1.4
M2_13
1.4
M2_14
1.4
M2_15
1.3
M2_16
1.3
M2_17
1.3
M2_18
1.3
M2_19
1.3
M2_20
1.3
M2_21
1.2
M2_22
1.2
M2_23
1.2
M2_24
1.2
M2_25
1.2
M2_26
1.2
M2_27
1.2
M2_28
1.2
M2_29
1.2
M2_30
1.1
M2_31
1.1
M2_32
1.1
M2_33
1.1
M2_34
1.1
M2_35
1.1
M2_36
1.1
M2_37
1.1
M2_38
1.1
M2_39
1.0
M2_40
1.0
M2_41
1.0
M2_42
1.0
M2_43
1.0
M2_44
1.0
M2_45
1.0
M2_46
0.9
M2_47
0.9
M2_48
0.9
M2_49
0.9
M2_50
0.8
M2_51
0.8
M2_52
0.8
M2_53
0.8
M2_54
0.8
M2_55
0.8
M2_56
0.8
M2_57
0.7
M2_58
0.7
M2_59
0.7
M2_60
0.7
M2_61
0.7
M2_62
0.7
M2_63
0.7
M2_64
0.7
M2_65
0.7
M2_66
0.7
M2_67
0.7
M2_68
0.7
M2_69
0.6
M2_70
0.6
M2_71
0.6
M2_72
0.6
M2_73
0.6
M2_74
0.6
M2_75
0.5
M2_76
0.5
M2_77
0.5
M2_78
0.5
M2_79
0.5
M2_80
0.5
M2_81
0.5
M2_82
0.5
M2_83
0.4
M2_84
0.4
M2_85
0.4
M2_86
0.4
M2_87
0.4
M2_88
0.3
M2_89
0.3
M2_90
0.2
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