A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
670.2
nTPM
Monaco:
1497.6
nTPM
Schmiedel:
182.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
670.2
HPA sample
nTPM
Classical monocyte nTPM: 572.3
Samples: 6
Max nTPM: 927.9
Min nTPM: 353.2
P10809_1003
644.0
P10809_1020
607.6
P10809_1039
927.9
P10809_1058
353.2
P10809_1080
502.2
P10809_1107
399.0
Intermediate monocyte nTPM: 394.0
Samples: 6
Max nTPM: 538.0
Min nTPM: 246.4
P10809_1004
418.3
P10809_1023
538.0
P10809_1042
510.3
P10809_1061
246.4
P10809_1081
342.6
P10809_1108
308.4
Non-classical monocyte nTPM: 670.2
Samples: 5
Max nTPM: 991.8
Min nTPM: 513.6
P10809_1005
523.6
P10809_1053
991.8
P10809_1072
729.4
P10809_1082
513.6
P10809_1109
592.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1497.6
Monaco sample
nTPM
Classical monocyte nTPM: 1097.5
Samples: 4
Max nTPM: 1287.4
Min nTPM: 824.3
RHH5313_R3680
1287.4
RHH5221_R3593
1251.7
RHH5250_R3622
824.3
RHH5279_R3651
1026.6
Intermediate monocyte nTPM: 950.3
Samples: 4
Max nTPM: 1019.7
Min nTPM: 850.7
RHH5314_R3681
1019.7
RHH5222_R3594
850.7
RHH5251_R3623
1011.9
RHH5280_R3652
919.0
Non-classical monocyte nTPM: 1497.6
Samples: 4
Max nTPM: 1820.7
Min nTPM: 1213.4
RHH5315_R3682
1820.7
RHH5223_R3595
1286.6
RHH5252_R3624
1213.4
RHH5281_R3653
1669.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
182.3
Schmiedel sample id
TPM
Classical monocyte TPM: 153.1
Samples: 91
Max TPM: 253.6
Min TPM: 102.9
MONOCYTES_1
253.6
MONOCYTES_2
228.9
MONOCYTES_3
214.5
MONOCYTES_4
205.4
MONOCYTES_5
203.9
MONOCYTES_6
199.2
MONOCYTES_7
196.1
MONOCYTES_8
195.5
MONOCYTES_9
194.4
MONOCYTES_10
190.3
MONOCYTES_11
189.0
MONOCYTES_12
188.9
MONOCYTES_13
188.6
MONOCYTES_14
188.0
MONOCYTES_15
187.2
MONOCYTES_16
184.9
MONOCYTES_17
180.3
MONOCYTES_18
177.3
MONOCYTES_19
171.7
MONOCYTES_20
171.2
MONOCYTES_21
170.7
MONOCYTES_22
170.5
MONOCYTES_23
167.8
MONOCYTES_24
167.5
MONOCYTES_25
167.0
MONOCYTES_26
165.6
MONOCYTES_27
165.1
MONOCYTES_28
164.8
MONOCYTES_29
164.7
MONOCYTES_30
164.3
MONOCYTES_31
162.2
MONOCYTES_32
161.0
MONOCYTES_33
159.9
MONOCYTES_34
159.1
MONOCYTES_35
158.1
MONOCYTES_36
156.5
MONOCYTES_37
155.8
MONOCYTES_38
155.5
MONOCYTES_39
154.3
MONOCYTES_40
151.3
MONOCYTES_41
151.0
MONOCYTES_42
149.9
MONOCYTES_43
149.7
MONOCYTES_44
149.3
MONOCYTES_45
149.1
MONOCYTES_46
148.9
MONOCYTES_47
148.4
MONOCYTES_48
148.2
MONOCYTES_49
147.4
MONOCYTES_50
146.7
MONOCYTES_51
146.4
MONOCYTES_52
144.3
MONOCYTES_53
143.2
MONOCYTES_54
142.8
MONOCYTES_55
142.4
MONOCYTES_56
142.0
MONOCYTES_57
141.4
MONOCYTES_58
139.8
MONOCYTES_59
139.7
MONOCYTES_60
138.7
MONOCYTES_61
137.9
MONOCYTES_62
136.1
MONOCYTES_63
135.7
MONOCYTES_64
135.1
MONOCYTES_65
134.8
MONOCYTES_66
134.7
MONOCYTES_67
134.7
MONOCYTES_68
133.1
MONOCYTES_69
132.4
MONOCYTES_70
132.2
MONOCYTES_71
132.2
MONOCYTES_72
131.6
MONOCYTES_73
131.5
MONOCYTES_74
129.7
MONOCYTES_75
127.8
MONOCYTES_76
127.6
MONOCYTES_77
127.3
MONOCYTES_78
124.0
MONOCYTES_79
123.7
MONOCYTES_80
122.7
MONOCYTES_81
122.5
MONOCYTES_82
122.0
MONOCYTES_83
121.1
MONOCYTES_84
115.6
MONOCYTES_85
114.7
MONOCYTES_86
113.0
MONOCYTES_87
112.7
MONOCYTES_88
112.0
MONOCYTES_89
109.2
MONOCYTES_90
103.4
MONOCYTES_91
102.9
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Non-classical monocyte TPM: 182.3
Samples: 90
Max TPM: 256.8
Min TPM: 129.1
M2_1
256.8
M2_2
250.5
M2_3
248.3
M2_4
245.6
M2_5
243.7
M2_6
239.2
M2_7
235.5
M2_8
233.3
M2_9
232.8
M2_10
224.0
M2_11
219.3
M2_12
219.2
M2_13
217.0
M2_14
216.1
M2_15
214.2
M2_16
213.9
M2_17
211.4
M2_18
208.8
M2_19
208.3
M2_20
204.4
M2_21
203.0
M2_22
201.8
M2_23
200.9
M2_24
200.4
M2_25
198.1
M2_26
197.8
M2_27
196.2
M2_28
195.4
M2_29
193.7
M2_30
191.9
M2_31
191.5
M2_32
191.0
M2_33
190.6
M2_34
189.8
M2_35
189.1
M2_36
188.4
M2_37
187.8
M2_38
187.7
M2_39
187.4
M2_40
185.7
M2_41
185.3
M2_42
182.7
M2_43
181.3
M2_44
179.0
M2_45
177.8
M2_46
176.7
M2_47
174.7
M2_48
174.0
M2_49
173.2
M2_50
172.0
M2_51
171.5
M2_52
170.7
M2_53
170.2
M2_54
169.4
M2_55
168.5
M2_56
167.3
M2_57
166.7
M2_58
166.4
M2_59
166.4
M2_60
164.7
M2_61
162.9
M2_62
162.7
M2_63
161.8
M2_64
159.7
M2_65
157.2
M2_66
157.0
M2_67
156.5
M2_68
155.5
M2_69
155.3
M2_70
154.8
M2_71
154.4
M2_72
152.5
M2_73
152.1
M2_74
151.7
M2_75
151.6
M2_76
151.5
M2_77
151.2
M2_78
151.0
M2_79
150.2
M2_80
150.2
M2_81
150.1
M2_82
149.7
M2_83
148.9
M2_84
148.1
M2_85
147.9
M2_86
144.9
M2_87
141.2
M2_88
140.2
M2_89
135.4
M2_90
129.1
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