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  • RPL18
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1131.9 nTPM
HPA Brain:558.0 nTPM
GTEx:1131.9 nTPM
FANTOM5:149.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

558.0
Sample id Sample description nTPM
Amygdala
nTPM: 517.1
2695 Female, age 67, right hemisphere 617.6
2514 Male, age 75, right hemisphere 535.2
2517 Female, age 94, left hemisphere 527.5
1987 Female, age 91, left hemisphere 466.5
2814 Male, age 76, right hemisphere 438.5
Basal amygdala
nTPM: 468.7
2827 Female, age 67, right hemisphere 674.3
2609 Male, age 75, right hemisphere 546.1
2110 Male, age 80, left hemisphere 441.5
2685 Female, age 94, left hemisphere 430.5
2243 Female, age 91, right hemisphere 373.1
1955 Male, age 76, both hemispheres 346.7
Central amygdala
nTPM: 529.2
2826 Female, age 94, left hemisphere 778.1
2515 Male, age 75, right hemisphere 620.7
2239 Male, age 80, left hemisphere 454.1
1905 Male, age 76, both hemispheres 405.7
2701 Female, age 91, right hemisphere 387.2
Corticomedial amygdala
nTPM: 471.1
2535 Female, age 67, right hemisphere 613.9
2428 Male, age 75, right hemisphere 562.6
2242 Female, age 91, right hemisphere 457.2
2829 Male, age 80, left hemisphere 444.0
2429 Female, age 94, left hemisphere 396.8
2240 Male, age 76, both hemispheres 351.9
Lateral amygdala
nTPM: 558.0
2830 Female, age 67, right hemisphere 796.7
2516 Male, age 75, right hemisphere 612.0
2534 Female, age 94, left hemisphere 579.2
2256 Male, age 80, left hemisphere 522.0
2255 Female, age 91, right hemisphere 471.2
1883 Male, age 76, both hemispheres 366.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1131.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1131.9
Samples: 181

Max nTPM: 2960.3
Min nTPM: 535.4
Std nTPM: 410.6
Median nTPM: 1033.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2960.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2623.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2575.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 2337.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 2271.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 2226.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 2027.0
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 1998.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1978.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1950.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1935.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1934.1
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 1834.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 1798.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 1787.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1785.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1781.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1764.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 1712.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 1639.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1600.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1582.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1576.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1547.0
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 1493.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1488.3
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 1487.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1482.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1438.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1434.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 1413.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 1408.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1406.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1398.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 1396.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1394.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 1392.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1392.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 1379.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1373.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 1357.6
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 1351.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 1351.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1343.9
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 1333.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1311.0
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 1276.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1269.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1266.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1258.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 1247.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1246.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1246.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1231.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 1229.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1206.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1188.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1186.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1183.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1178.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1168.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 1168.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 1151.6
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 1151.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 1137.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1129.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1107.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1106.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1103.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1102.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1099.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1098.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1093.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1092.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 1087.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 1086.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1083.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 1080.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1080.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1065.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 1065.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1059.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1046.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1046.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 1045.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1041.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1035.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1035.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1034.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1033.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1033.2
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 1021.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 1019.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1017.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 1010.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1003.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1000.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 999.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 994.3
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 993.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 987.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 984.2
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 977.5
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 971.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 962.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 961.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 955.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 955.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 952.8
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 950.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 948.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 947.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 943.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 934.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 931.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 930.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 927.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 927.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 920.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 917.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 916.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 914.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 913.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 912.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 910.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 909.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 908.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 906.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 896.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 889.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 887.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 877.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 876.7
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 875.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 872.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 871.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 870.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 861.6
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 860.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 860.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 852.9
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 851.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 844.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 839.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 838.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 826.5
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 824.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 814.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 812.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 807.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 786.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 781.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 779.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 777.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 765.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 763.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 754.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 750.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 749.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 748.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 744.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 738.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 738.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 737.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 728.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 726.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 725.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 722.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 711.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 703.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 698.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 693.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 674.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 668.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 627.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 627.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 612.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 594.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 571.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 545.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 535.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

149.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 149.4
FF:10151-102I7 76 years, female 149.4

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