MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:991.4 nTPM
HPA Brain:503.1 nTPM
GTEx:991.4 nTPM
FANTOM5:174.9 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 503.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 473.0
2586 Male, age 75, left hemisphere 644.9
2828 Female, age 72, unknown 496.9
2666 Male, age 74, left hemisphere 490.1
2411 Female, age 72, unknown 487.5
1870 Female, age 42, unknown 452.3
1830 Male, age 51, unknown 450.0
1833 Male, age 53, unknown 442.0
1827 Male, age 72, unknown 429.8
2219 Male, age 76, both hemispheres 419.0
2019 Male, age 18, unknown 417.6
Dorsal raphe nucleus
nTPM: 449.0
2016 Female, age 72, unknown 470.6
2750 Male, age 76, both hemispheres 458.7
2298 Female, age 72, unknown 454.1
2047 Male, age 72, unknown 442.0
1828 Male, age 53, unknown 419.6
Inferior colliculus
nTPM: 424.3
1890 Male, age 53, unknown 442.5
2849 Male, age 72, unknown 441.0
1848 Female, age 42, unknown 417.2
2097 Female, age 72, unknown 396.6
Median raphe nucleus
nTPM: 448.7
2220 Male, age 76, midline 448.7
Periaquaductal grey, anterior
nTPM: 503.1
2502 Female, age 75, unknown 586.6
1795 Male, age 51, unknown 469.7
1947 Male, age 18, unknown 453.0
Periaquaductal grey, dorsal
nTPM: 432.4
1840 Male, age 53, unknown 466.6
2464 Female, age 72, unknown 445.2
1831 Male, age 72, unknown 421.9
2850 Male, age 76, both hemispheres 396.0
Periaquaductal grey, lateral
nTPM: 434.5
2053 Male, age 18, unknown 466.1
2272 Male, age 74, both hemispheres 419.4
2140 Male, age 76, both hemispheres 418.1
Pretectal area
nTPM: 416.5
2316 Male, age 76, right hemisphere 458.1
2825 Male, age 18, unknown 442.8
2007 Male, age 72, unknown 438.7
2407 Male, age 75, both hemispheres 429.6
2224 Female, age 72, unknown 422.9
1817 Female, age 42, unknown 420.4
1815 Male, age 53, unknown 414.1
1816 Male, age 51, unknown 408.8
1944 Female, age 72, unknown 385.4
2273 Male, age 74, both hemispheres 382.9
2667 Female, age 75, unknown 377.6
Red nucleus
nTPM: 490.9
2503 Female, age 72, unknown 599.4
2584 Male, age 75, left hemisphere 531.5
2227 Male, age 72, unknown 527.5
1904 Male, age 53, unknown 520.7
2769 Male, age 72, unknown 514.7
1865 Male, age 51, unknown 514.0
2588 Male, age 74, left hemisphere 471.9
1821 Female, age 72, unknown 471.3
2725 Female, age 75, unknown 449.8
1954 Female, age 42, unknown 446.0
2785 Male, age 18, unknown 442.2
2823 Male, age 76, right hemisphere 401.2
Substantia nigra
nTPM: 484.3
2699 Male, age 18, unknown 595.5
1851 Male, age 51, unknown 575.5
2665 Male, age 74, both hemispheres 566.4
1916 Female, age 42, unknown 510.3
2590 Female, age 75, unknown 499.1
2583 Male, age 75, right hemisphere 476.5
2409 Female, age 72, unknown 440.4
1941 Male, age 53, unknown 401.2
1889 Female, age 72, unknown 391.7
2241 Male, age 72, unknown 386.8
Superior colliculus
nTPM: 467.5
2664 Male, age 75, both hemispheres 544.1
1995 Male, age 72, unknown 520.4
1796 Male, age 53, unknown 511.4
2587 Male, age 74, left hemisphere 507.1
1913 Female, age 42, unknown 498.5
2668 Female, age 75, unknown 452.9
2261 Male, age 18, unknown 446.1
1839 Male, age 51, unknown 437.0
2087 Female, age 72, unknown 404.6
1895 Male, age 76, right hemisphere 352.7
Ventral tegmental area
nTPM: 481.2
1915 Female, age 42, unknown 531.9
2410 Female, age 72, unknown 492.8
2021 Male, age 53, unknown 491.7
2223 Female, age 72, unknown 491.5
1942 Male, age 51, unknown 454.0
2218 Male, age 76, both hemispheres 425.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 991.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 991.4
Samples: 183

Max nTPM: 3099.0
Min nTPM: 324.4
Std nTPM: 395.3
Median nTPM: 939.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 3099.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 2342.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 2172.4
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 2018.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2016.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1999.4
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 1867.9
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 1843.1
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 1776.5
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 1773.7
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 1754.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 174.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 174.9
FF:10158-103A5 76 years, female 174.9

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