MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:60.6 nTPM
HPA Brain:120.4 nTPM
GTEx:60.6 nTPM
FANTOM5:51.4 Scaled Tags Per Million
Pig:105.7 nTPM
Mouse:94.9 nTPM
Allen mouse:2.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 120.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 112.3
2586 Male, age 75, left hemisphere 174.9
2666 Male, age 74, left hemisphere 136.2
2828 Female, age 72, unknown 127.4
1827 Male, age 72, unknown 125.3
2219 Male, age 76, both hemispheres 101.3
1870 Female, age 42, unknown 97.2
1833 Male, age 53, unknown 95.2
2019 Male, age 18, unknown 93.6
1830 Male, age 51, unknown 88.7
2411 Female, age 72, unknown 83.2
Dorsal raphe nucleus
nTPM: 88.9
2047 Male, age 72, unknown 97.3
2298 Female, age 72, unknown 94.8
1828 Male, age 53, unknown 88.7
2750 Male, age 76, both hemispheres 85.0
2016 Female, age 72, unknown 78.9
Inferior colliculus
nTPM: 102.0
2849 Male, age 72, unknown 116.1
1848 Female, age 42, unknown 104.8
1890 Male, age 53, unknown 96.6
2097 Female, age 72, unknown 90.4
Median raphe nucleus
nTPM: 96.0
2220 Male, age 76, midline 96.0
Periaquaductal grey, anterior
nTPM: 120.4
1795 Male, age 51, unknown 131.8
1947 Male, age 18, unknown 119.7
2502 Female, age 75, unknown 109.6
Periaquaductal grey, dorsal
nTPM: 94.0
1840 Male, age 53, unknown 103.4
1831 Male, age 72, unknown 95.4
2464 Female, age 72, unknown 90.0
2850 Male, age 76, both hemispheres 87.1
Periaquaductal grey, lateral
nTPM: 84.5
2053 Male, age 18, unknown 90.4
2272 Male, age 74, both hemispheres 83.0
2140 Male, age 76, both hemispheres 80.1
Pretectal area
nTPM: 109.1
1816 Male, age 51, unknown 143.1
2007 Male, age 72, unknown 127.7
1944 Female, age 72, unknown 121.8
1817 Female, age 42, unknown 121.0
1815 Male, age 53, unknown 110.6
2407 Male, age 75, both hemispheres 109.8
2667 Female, age 75, unknown 108.4
2825 Male, age 18, unknown 107.6
2224 Female, age 72, unknown 91.5
2316 Male, age 76, right hemisphere 85.5
2273 Male, age 74, both hemispheres 73.3
Red nucleus
nTPM: 95.9
2584 Male, age 75, left hemisphere 137.2
2588 Male, age 74, left hemisphere 106.7
2785 Male, age 18, unknown 100.9
2769 Male, age 72, unknown 97.6
2227 Male, age 72, unknown 93.0
2725 Female, age 75, unknown 91.8
2503 Female, age 72, unknown 91.7
1954 Female, age 42, unknown 88.5
1865 Male, age 51, unknown 88.4
2823 Male, age 76, right hemisphere 86.9
1904 Male, age 53, unknown 85.9
1821 Female, age 72, unknown 82.5
Substantia nigra
nTPM: 104.2
2665 Male, age 74, both hemispheres 133.5
2583 Male, age 75, right hemisphere 126.9
1916 Female, age 42, unknown 119.8
1941 Male, age 53, unknown 111.4
1889 Female, age 72, unknown 105.3
1851 Male, age 51, unknown 103.3
2590 Female, age 75, unknown 100.6
2699 Male, age 18, unknown 94.0
2409 Female, age 72, unknown 75.5
2241 Male, age 72, unknown 72.1
Superior colliculus
nTPM: 110.9
2664 Male, age 75, both hemispheres 161.3
1796 Male, age 53, unknown 128.3
2668 Female, age 75, unknown 124.5
2261 Male, age 18, unknown 122.1
2087 Female, age 72, unknown 111.3
1839 Male, age 51, unknown 98.7
2587 Male, age 74, left hemisphere 94.1
1913 Female, age 42, unknown 90.4
1895 Male, age 76, right hemisphere 90.1
1995 Male, age 72, unknown 88.4
Ventral tegmental area
nTPM: 98.1
2223 Female, age 72, unknown 114.2
1915 Female, age 42, unknown 104.7
1942 Male, age 51, unknown 96.8
2218 Male, age 76, both hemispheres 94.7
2021 Male, age 53, unknown 89.7
2410 Female, age 72, unknown 88.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 60.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 60.6
Samples: 183

Max nTPM: 128.9
Min nTPM: 31.5
Std nTPM: 13.8
Median nTPM: 59.1
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 128.9
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 125.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 122.0
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 109.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 89.6
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 86.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 85.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 81.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 81.6
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 79.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 79.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 51.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.4
FF:10158-103A5 76 years, female 51.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 105.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.6
Samples: 4

Max nTPM: 83.8
Min nTPM: 55.4
Sample A Female 83.8
Sample B Female 55.4
Sample C Male 82.4
Sample D Male 56.6
Midbrain
nTPM: 91.3
Samples: 4

Max nTPM: 127.5
Min nTPM: 65.2
Sample A Female 77.3
Sample B Female 65.2
Sample C Male 127.5
Sample D Male 95.0
Periaqueductal gray
nTPM: 65.6
Samples: 3

Max nTPM: 75.0
Min nTPM: 57.7
Sample B Female 64.0
Sample C Male 75.0
Sample D Male 57.7
Superior colliculi
nTPM: 105.7
Samples: 4

Max nTPM: 134.7
Min nTPM: 81.7
Sample A Female 105.2
Sample B Female 81.7
Sample C Male 134.7
Sample D Male 101.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 94.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 94.9
Samples: 4

Max nTPM: 105.9
Min nTPM: 86.6
Sample A Male 105.9
Sample B Male 92.6
Sample C Female 86.6
Sample D Female 94.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
76003523 Antisense, RP_060608_02_F04, Mouse strain C57BL/6J (56 days, male) 2.3

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo