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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

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  • EVOLUTION

  • HIPK2
EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN72 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM9 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE14 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS
MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:471.7 nTPM
GTEx:146.1 nTPM
FANTOM5:398.7 Scaled Tags Per Million
Macaque:238.1 nTPM
Pig:107.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

471.7
Sample id Sample description nTPM
Substantia nigra
nTPM: 471.7
2699 Male, age 18, unknown 687.6
2665 Male, age 74, both hemispheres 606.3
2590 Female, age 75, unknown 563.2
2583 Male, age 75, right hemisphere 525.4
2409 Female, age 72, unknown 487.6
1851 Male, age 51, unknown 465.5
1889 Female, age 72, unknown 370.0
2241 Male, age 72, unknown 349.5
1916 Female, age 42, unknown 341.5
1941 Male, age 53, unknown 320.6

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 146.1
Samples: 183

Max nTPM: 411.4
Min nTPM: 9.5
Std nTPM: 82.8
Median nTPM: 130.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 411.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 410.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 385.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 375.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 350.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 336.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 334.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 328.1
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 310.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 303.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 301.4
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 299.4
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 282.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 280.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 277.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 277.2
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 273.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 266.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 260.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 260.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 250.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 250.3
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 245.9
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 240.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 235.9
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 235.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 231.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 229.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 228.4
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 224.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 223.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 221.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 221.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 217.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 217.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 216.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 214.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 211.0
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 209.5
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 208.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 206.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 203.2
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 201.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 201.5
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 200.3
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 196.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 196.1
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 195.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 190.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 190.4
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 190.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 186.4
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 183.6
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 183.1
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 179.0
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 178.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 178.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 172.3
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 170.2
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 169.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 166.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 163.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 160.8
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 160.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 160.2
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 158.6
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 157.6
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 157.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 156.2
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 156.0
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 155.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 155.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 154.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 153.6
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 151.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 148.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 148.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 146.4
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 146.0
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 145.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 145.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 142.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 141.4
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 138.5
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 138.4
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 137.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 136.6
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 134.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 133.0
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 131.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 131.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 130.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 128.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 126.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 124.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 122.0
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 121.0
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 120.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 120.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 119.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 118.4
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 115.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 113.9
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 113.7
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 113.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 113.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 113.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 110.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 109.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 108.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 108.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 107.5
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 107.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 107.0
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 106.8
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 102.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 102.5
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 102.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 100.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 100.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 100.2
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 99.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 96.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 94.7
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 94.1
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 93.0
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 90.8
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 88.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 87.7
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 86.8
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 86.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 86.5
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 85.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 85.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 82.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 81.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 80.2
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 78.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 78.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 78.4
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 77.8
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 77.2
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 76.4
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 76.4
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 74.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 74.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 74.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 73.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 73.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 72.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 71.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 70.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 69.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 69.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 69.1
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 67.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 65.4
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 65.4
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 64.7
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 63.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 60.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 60.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 59.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 57.4
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 57.1
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 55.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 55.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 54.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 53.6
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 53.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 49.2
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 47.2
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 46.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 42.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 42.1
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 40.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 36.3
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 35.0
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 30.4
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 29.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 19.2
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 9.5
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

398.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 398.7
FF:10158-103A5 76 years, female 398.7

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

238.1
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 238.1
Samples: 1

Max nTPM: 238.1
Min nTPM: 238.1
Sample A 238.1

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

107.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 107.3
Samples: 3

Max nTPM: 124.0
Min nTPM: 96.4
Sample A Female 101.4
Sample B Female 96.4
Sample C Male 124.0

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