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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

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  • HIPK2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:69.8 nTPM
FANTOM5:169.4 Scaled Tags Per Million
Pig:59.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA007611
Glial cells High
Neuronal cells High


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

69.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.8
Samples: 300

Max nTPM: 496.8
Min nTPM: 12.4
Std nTPM: 52.8
Median nTPM: 56.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 496.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 305.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 303.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 271.6
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 244.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 226.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 210.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 198.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 197.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 192.1
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 191.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 186.0
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 180.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 179.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 168.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 166.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 155.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 154.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 148.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 146.2
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 143.3
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 142.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 141.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 138.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 137.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 135.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 135.2
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 134.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 132.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 130.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 128.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 122.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 122.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 121.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 118.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 117.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 116.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 115.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 114.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 114.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 113.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 112.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 111.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 107.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 106.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 106.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 105.4
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 104.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 104.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 102.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 101.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 101.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 99.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 98.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 98.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 98.1
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 96.2
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 95.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 94.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 93.2
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 93.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 91.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 91.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 90.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 90.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 89.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 88.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 87.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 87.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 86.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 86.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 86.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 86.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 85.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 85.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 84.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 84.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 83.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 83.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 83.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 83.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 82.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 82.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 80.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 79.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 79.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 79.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 77.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 77.2
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 77.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 76.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 76.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 75.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 74.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 74.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 74.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 74.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 73.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 72.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 72.4
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 71.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 71.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 71.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 71.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 70.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 70.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 70.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 69.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 68.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 68.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 68.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 68.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 67.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 67.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 67.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 66.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 66.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 66.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 66.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 66.1
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 65.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 65.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 64.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 64.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 64.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 64.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 64.3
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 63.1
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 62.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 62.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 62.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 62.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 62.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 61.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 61.2
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 61.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 60.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 60.5
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 60.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 60.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 59.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 59.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 59.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 59.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 59.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 58.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 58.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 58.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 57.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 56.6
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 55.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 55.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 54.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 54.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 54.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 54.7
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 53.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 53.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 53.4
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 52.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 52.6
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 52.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 52.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 52.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 51.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 51.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 51.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 50.9
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 50.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 50.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 50.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 50.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 50.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 49.1
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 49.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 48.8
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 48.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 48.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 47.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 47.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 47.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 47.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 47.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 47.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 47.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 46.9
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 46.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 46.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 45.6
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 44.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 44.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 44.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 44.4
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 44.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 44.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 42.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 42.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 42.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 42.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 42.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 41.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 41.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 41.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 41.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 40.9
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 40.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 40.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 40.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 40.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 39.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 39.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 39.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 38.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 38.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 38.5
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 38.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 38.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 38.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 38.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 38.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 37.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 37.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 37.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 37.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 36.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 36.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 36.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 36.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 36.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 35.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 35.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 35.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 34.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 34.7
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 34.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 34.0
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 33.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 33.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 33.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 33.1
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 33.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 33.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 32.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 32.8
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 32.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 32.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 32.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 32.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 32.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 32.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 31.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 31.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 31.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 31.5
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 31.5
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 31.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 31.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 31.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 29.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 29.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 29.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 29.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 29.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 28.3
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 28.1
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 28.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 27.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 27.6
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 27.2
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 27.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 26.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 26.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 25.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 25.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 25.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 24.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 23.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 23.6
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 23.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 23.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 23.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 22.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 22.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 21.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 21.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 21.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 20.7
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 20.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 20.5
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 20.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 20.3
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 20.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 20.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 19.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 18.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 17.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 16.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 14.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 13.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 12.4
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

169.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 169.4
FF:10164-103B2 76 years, female 169.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.8
Pig sample Sample description nTPM
Caudate
nTPM: 59.8
Samples: 4

Max nTPM: 67.0
Min nTPM: 51.4
Sample A Female 51.4
Sample B Female 59.5
Sample C Male 67.0
Sample D Male 61.2

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