MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:146.1 nTPM
HPA Brain:637.5 nTPM
GTEx:146.1 nTPM
FANTOM5:398.7 Scaled Tags Per Million
Pig:128.5 nTPM
Mouse:20.3 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 637.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 531.3
2586 Male, age 75, left hemisphere 741.0
2666 Male, age 74, left hemisphere 728.0
1833 Male, age 53, unknown 596.8
1830 Male, age 51, unknown 576.0
2828 Female, age 72, unknown 566.8
1870 Female, age 42, unknown 460.7
2219 Male, age 76, both hemispheres 454.5
2411 Female, age 72, unknown 401.9
1827 Male, age 72, unknown 398.3
2019 Male, age 18, unknown 389.3
Dorsal raphe nucleus
nTPM: 375.5
2016 Female, age 72, unknown 498.3
2750 Male, age 76, both hemispheres 444.7
1828 Male, age 53, unknown 387.5
2047 Male, age 72, unknown 320.0
2298 Female, age 72, unknown 226.9
Inferior colliculus
nTPM: 372.2
2849 Male, age 72, unknown 525.3
1848 Female, age 42, unknown 383.8
1890 Male, age 53, unknown 357.4
2097 Female, age 72, unknown 222.1
Median raphe nucleus
nTPM: 319.7
2220 Male, age 76, midline 319.7
Periaquaductal grey, anterior
nTPM: 375.5
2502 Female, age 75, unknown 406.2
1947 Male, age 18, unknown 366.0
1795 Male, age 51, unknown 354.4
Periaquaductal grey, dorsal
nTPM: 387.2
2850 Male, age 76, both hemispheres 410.8
1831 Male, age 72, unknown 404.1
2464 Female, age 72, unknown 401.8
1840 Male, age 53, unknown 332.2
Periaquaductal grey, lateral
nTPM: 379.7
2053 Male, age 18, unknown 441.5
2140 Male, age 76, both hemispheres 369.1
2272 Male, age 74, both hemispheres 328.6
Pretectal area
nTPM: 376.6
2407 Male, age 75, both hemispheres 507.2
1815 Male, age 53, unknown 489.6
2316 Male, age 76, right hemisphere 473.1
2825 Male, age 18, unknown 455.3
1817 Female, age 42, unknown 396.4
2007 Male, age 72, unknown 330.6
2667 Female, age 75, unknown 318.4
1944 Female, age 72, unknown 313.2
2224 Female, age 72, unknown 309.3
1816 Male, age 51, unknown 286.3
2273 Male, age 74, both hemispheres 263.4
Red nucleus
nTPM: 637.5
2588 Male, age 74, left hemisphere 784.3
2503 Female, age 72, unknown 753.4
1904 Male, age 53, unknown 732.1
2823 Male, age 76, right hemisphere 706.7
1865 Male, age 51, unknown 689.6
2769 Male, age 72, unknown 640.0
2227 Male, age 72, unknown 629.2
2584 Male, age 75, left hemisphere 580.1
1954 Female, age 42, unknown 545.3
2785 Male, age 18, unknown 535.3
2725 Female, age 75, unknown 532.2
1821 Female, age 72, unknown 522.1
Substantia nigra
nTPM: 470.2
2699 Male, age 18, unknown 684.1
2665 Male, age 74, both hemispheres 603.1
2590 Female, age 75, unknown 560.9
2583 Male, age 75, right hemisphere 529.7
2409 Female, age 72, unknown 485.8
1851 Male, age 51, unknown 463.4
1889 Female, age 72, unknown 368.3
2241 Male, age 72, unknown 347.9
1916 Female, age 42, unknown 339.9
1941 Male, age 53, unknown 319.1
Superior colliculus
nTPM: 485.7
1995 Male, age 72, unknown 650.2
2664 Male, age 75, both hemispheres 574.2
1913 Female, age 42, unknown 551.5
2587 Male, age 74, left hemisphere 541.8
1839 Male, age 51, unknown 509.8
2668 Female, age 75, unknown 487.6
1895 Male, age 76, right hemisphere 456.1
1796 Male, age 53, unknown 398.9
2261 Male, age 18, unknown 349.9
2087 Female, age 72, unknown 337.3
Ventral tegmental area
nTPM: 400.3
2410 Female, age 72, unknown 454.8
2021 Male, age 53, unknown 411.4
1942 Male, age 51, unknown 408.2
2223 Female, age 72, unknown 387.4
1915 Female, age 42, unknown 387.2
2218 Male, age 76, both hemispheres 353.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 146.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 146.1
Samples: 183

Max nTPM: 411.4
Min nTPM: 9.5
Std nTPM: 82.8
Median nTPM: 130.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 411.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 410.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 385.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 375.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 350.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 336.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 334.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 328.1
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 310.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 303.8
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 301.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 398.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 398.7
FF:10158-103A5 76 years, female 398.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 128.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 128.5
Samples: 4

Max nTPM: 193.9
Min nTPM: 96.1
Sample A Female 100.7
Sample B Female 96.1
Sample C Male 123.4
Sample D Male 193.9
Midbrain
nTPM: 111.1
Samples: 4

Max nTPM: 147.6
Min nTPM: 81.2
Sample A Female 114.3
Sample B Female 147.6
Sample C Male 81.2
Sample D Male 101.2
Periaqueductal gray
nTPM: 109.1
Samples: 3

Max nTPM: 125.7
Min nTPM: 93.9
Sample B Female 125.7
Sample C Male 93.9
Sample D Male 107.8
Superior colliculi
nTPM: 99.9
Samples: 4

Max nTPM: 136.4
Min nTPM: 69.3
Sample A Female 97.2
Sample B Female 69.3
Sample C Male 96.8
Sample D Male 136.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.3
Samples: 4

Max nTPM: 22.6
Min nTPM: 16.8
Sample A Male 16.8
Sample B Male 21.7
Sample C Female 20.1
Sample D Female 22.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68196925 Antisense, RP_041116_01_F03, Mouse strain C57BL/6J (56 days, male) 0.6

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