HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:116.5 nTPM
HPA Brain:380.5 nTPM
GTEx:116.5 nTPM
FANTOM5:263.2 Scaled Tags Per Million
Pig:83.5 nTPM
Mouse:14.6 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007611
Glial cells High
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 380.5
Sample id Sample description nTPM
Hippocampus
nTPM: 304.8
2529 Female, age 94, left hemisphere 403.0
2621 Female, age 67, right hemisphere 327.9
1911 Female, age 85, right hemisphere 310.7
2148 Female, age 91, left hemisphere 281.2
1898 Male, age 80, left hemisphere 259.7
1855 Male, age 76, left hemisphere 246.0
Dentate gyrus
nTPM: 314.5
2530 Female, age 94, left hemisphere 604.3
2531 Female, age 67, both hemispheres 317.5
2010 Male, age 76, both hemispheres 290.4
2246 Female, age 85, both hemispheres 275.8
2528 Male, age 74, both hemispheres 226.0
1927 Female, age 91, both hemispheres 173.0
Entorhinal gyrus
nTPM: 350.6
2686 Male, age 75, right hemisphere 547.8
2117 Female, age 91, right hemisphere 495.8
2764 Male, age 80, right hemisphere 316.2
2613 Female, age 94, left hemisphere 298.1
1938 Female, age 85, left hemisphere 248.0
1787 Male, age 76, left hemisphere 197.5
Hippocampus, CA1
nTPM: 218.4
2527 Male, age 74, both hemispheres 283.3
2082 Female, age 91, right hemisphere 257.8
1873 Female, age 85, both hemispheres 242.9
2749 Male, age 80, left hemisphere 171.7
2045 Male, age 76, both hemispheres 136.5
Hippocampus, CA2
nTPM: 271.1
1963 Male, age 80, left hemisphere 370.4
2437 Female, age 94, left hemisphere 343.6
2113 Female, age 91, right hemisphere 279.3
1940 Female, age 85, left hemisphere 269.7
2249 Male, age 74, both hemispheres 227.0
1892 Male, age 76, both hemispheres 136.8
Hippocampus, CA3
nTPM: 217.8
1891 Female, age 85, both hemispheres 357.4
2861 Female, age 67, both hemispheres 289.0
1867 Male, age 76, both hemispheres 180.0
2620 Female, age 94, left hemisphere 171.5
2436 Male, age 74, both hemispheres 159.9
2137 Male, age 80, left hemisphere 149.0
Parahippocampal cortex
nTPM: 265.4
2692 Male, age 74, both hemispheres 430.7
2532 Female, age 72, left hemisphere 353.2
2622 Female, age 67, right hemisphere 329.0
2245 Female, age 91, both hemispheres 282.8
1990 Female, age 91, right hemisphere 266.5
2018 Male, age 76, both hemispheres 238.5
1850 Male, age 80, both hemispheres 222.9
1933 Female, age 85, both hemispheres 199.5
2250 Female, age 67, right hemisphere 166.9
2693 Female, age 94, both hemispheres 163.7
Perirhinal gyrus
nTPM: 154.9
2848 Male, age 76, right hemisphere 171.6
1847 Female, age 91, left hemisphere 167.5
1794 Male, age 80, right hemisphere 165.2
2521 Female, age 94, right hemisphere 136.6
1841 Female, age 85, right hemisphere 133.5
Subiculum
nTPM: 380.5
2438 Female, age 94, left hemisphere 552.3
2042 Male, age 76, both hemispheres 439.0
1901 Male, age 80, both hemispheres 382.3
2619 Male, age 74, both hemispheres 317.5
1977 Female, age 85, both hemispheres 313.7
2729 Female, age 91, right hemisphere 277.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 116.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 116.5
Samples: 255

Max nTPM: 523.1
Min nTPM: 22.0
Std nTPM: 78.9
Median nTPM: 94.7
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 523.1
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 505.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 467.8
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 376.5
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 338.7
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 322.4
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 312.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 304.0
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 297.2
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 294.0
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 290.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 263.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 263.2
FF:10153-102I9 76 years, female 364.5
FF:10169-103B7 60 years, female 162.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 83.5
Pig sample Sample description nTPM
Subiculum
nTPM: 59.2
Samples: 4

Max nTPM: 68.6
Min nTPM: 52.5
Sample A Female 68.6
Sample B Female 63.0
Sample C Male 52.5
Sample D Male 52.8
Dorsal hippocampus
nTPM: 83.6
Samples: 4

Max nTPM: 111.4
Min nTPM: 43.9
Sample A Female 109.0
Sample B Female 69.9
Sample C Male 111.4
Sample D Male 43.9
Entorhinal cortex
nTPM: 54.8
Samples: 4

Max nTPM: 62.4
Min nTPM: 49.9
Sample A Female 49.9
Sample B Female 55.1
Sample C Male 51.7
Sample D Male 62.4
Ventral hippocampus
nTPM: 70.0
Samples: 4

Max nTPM: 87.6
Min nTPM: 48.7
Sample A Female 63.1
Sample B Female 48.7
Sample C Male 80.7
Sample D Male 87.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 14.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 14.6
Samples: 4

Max nTPM: 17.0
Min nTPM: 13.5
Sample A Male 17.0
Sample B Male 13.5
Sample C Female 13.7
Sample D Female 14.3
Hippocampal formation
nTPM: 12.0
Samples: 4

Max nTPM: 14.1
Min nTPM: 10.5
Sample A Male 10.5
Sample B Male 11.3
Sample C Female 14.1
Sample D Female 12.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.5
68196925 Antisense, RP_041116_01_F03, Mouse strain C57BL/6J (56 days, male) 0.5

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