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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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EVOLUTIONARY SUBSTANTIA NIGRA Show tissue menu
BRAIN74 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM10 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE15 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX FRONTAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS MOTOR AND PREFRONTAL CORTEX
MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX SEPTAL AREA SEPTUM
SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE FEMALE PREPUTIAL GLAND OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE MENINGES ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
SUBSTANTIA NIGRA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:19.9 nTPM
GTEx:31.7 nTPM
FANTOM5:16.8 Scaled Tags Per Million
Macaque:17.9 nTPM
Pig:15.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

19.9
Sample id Sample description nTPM
Substantia nigra
nTPM: 19.9
2699 Male, age 18, unknown 25.5
1916 Female, age 42, unknown 24.9
1851 Male, age 51, unknown 23.3
1889 Female, age 72, unknown 21.7
1941 Male, age 53, unknown 20.7
2590 Female, age 75, unknown 19.2
2583 Male, age 75, right hemisphere 19.0
2241 Male, age 72, unknown 17.8
2665 Male, age 74, both hemispheres 17.1
2409 Female, age 72, unknown 9.8

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.7
Samples: 183

Max nTPM: 61.3
Min nTPM: 13.2
Std nTPM: 8.6
Median nTPM: 29.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 61.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 58.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 54.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 52.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 52.4
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 51.8
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 51.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 50.9
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 49.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 47.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 47.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 47.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 46.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 46.1
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 45.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 45.0
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 44.4
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 43.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 43.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 43.0
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 42.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 42.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 41.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 41.6
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 41.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 41.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 40.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 40.9
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 40.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 40.2
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 39.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 39.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 39.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 39.0
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 38.4
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 38.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 37.9
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 37.7
GTEX-1RQEC-0011-R2b-SM-EY5ZT 60-69 years, male 37.4
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 37.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 37.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 37.2
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 37.2
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 37.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 37.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 37.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 36.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 36.8
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 36.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 36.3
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 36.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 36.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 35.9
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 35.9
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 35.8
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 35.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 35.3
GTEX-1JMPZ-0011-R2a-SM-G8LLS 30-39 years, male 35.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 35.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 34.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 34.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 34.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 34.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 33.7
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 33.5
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 33.2
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 33.1
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 32.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 32.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 32.8
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 32.8
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 32.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 32.2
GTEX-1RQED-0011-R2a-SM-F3K5T 60-69 years, male 32.2
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 32.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 32.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 31.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 31.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 31.7
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 31.5
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 31.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 31.1
GTEX-1LG7Y-0011-R2b-SM-G8LMM 50-59 years, male 30.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 30.8
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 30.5
GTEX-1RDX4-0011-R2b-SM-F649Z 50-59 years, female 30.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 30.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 30.2
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 30.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 30.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 30.0
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 29.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 29.8
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 29.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 29.7
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 29.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 29.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 29.4
GTEX-1NV8Z-0011-R2b-SM-F648N 60-69 years, male 29.4
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 29.3
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 29.3
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 29.2
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 29.1
GTEX-1N2EE-0011-R2a-SM-F649F 60-69 years, male 29.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 28.9
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 28.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 28.4
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 28.4
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 28.3
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 28.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 28.3
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 28.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 28.0
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 27.9
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 27.8
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 27.7
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 27.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 27.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 27.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 27.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 27.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 26.6
GTEX-13OVL-0011-R2b-SM-H65ZN 50-59 years, male 26.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 26.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 26.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 26.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 26.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 26.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 26.4
GTEX-1JMQJ-0011-R2a-SM-F6493 50-59 years, male 26.4
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 26.3
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 26.3
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 26.2
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 26.2
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 25.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 25.8
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 25.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 25.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 25.6
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 25.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 25.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 25.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 25.2
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 25.2
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 25.1
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 24.9
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 24.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 24.7
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 24.6
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 24.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 24.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 24.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 24.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 24.2
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 24.1
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 24.1
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 23.9
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 23.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 23.6
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 23.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 23.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 23.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 23.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 21.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 21.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 21.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 21.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 21.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 21.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 21.0
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 20.8
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 20.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 20.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 20.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 19.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 19.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 19.2
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 18.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 16.4
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 15.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 15.5
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 13.2
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SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

16.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.8
FF:10158-103A5 76 years, female 16.8

SUBSTANTIA NIGRA - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

17.9
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 17.9
Samples: 1

Max nTPM: 17.9
Min nTPM: 17.9
Sample A 17.9

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.1
Samples: 3

Max nTPM: 17.3
Min nTPM: 13.5
Sample A Female 17.3
Sample B Female 13.5
Sample C Male 14.6

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