BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.1 nTPM
HPA Brain:118.1 nTPM
GTEx:18.1 nTPM
FANTOM5:278.7 Scaled Tags Per Million
Macaque:95.4 nTPM
Mouse:42.1 nTPM
Rat:69.8 nTPM
Pig:82.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 118.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.5
2411 Female, age 72, unknown 113.1
2019 Male, age 18, unknown 109.1
1833 Male, age 53, unknown 104.2
1830 Male, age 51, unknown 102.4
1870 Female, age 42, unknown 100.0
2828 Female, age 72, unknown 83.8
2219 Male, age 76, both hemispheres 83.0
2666 Male, age 74, left hemisphere 65.4
1827 Male, age 72, unknown 61.0
2586 Male, age 75, left hemisphere 43.3
Dorsal raphe nucleus
nTPM: 65.4
2750 Male, age 76, both hemispheres 108.6
2016 Female, age 72, unknown 66.9
1828 Male, age 53, unknown 66.2
2298 Female, age 72, unknown 44.3
2047 Male, age 72, unknown 41.2
Inferior colliculus
nTPM: 63.2
2097 Female, age 72, unknown 67.9
1890 Male, age 53, unknown 67.7
1848 Female, age 42, unknown 63.4
2849 Male, age 72, unknown 53.6
Median raphe nucleus
nTPM: 55.6
2220 Male, age 76, midline 55.6
Periaquaductal grey, anterior
nTPM: 56.3
2502 Female, age 75, unknown 65.5
1947 Male, age 18, unknown 62.8
1795 Male, age 51, unknown 40.7
Periaquaductal grey, dorsal
nTPM: 42.1
2464 Female, age 72, unknown 65.4
1831 Male, age 72, unknown 43.0
2850 Male, age 76, both hemispheres 31.8
1840 Male, age 53, unknown 28.1
Periaquaductal grey, lateral
nTPM: 44.2
2272 Male, age 74, both hemispheres 56.9
2053 Male, age 18, unknown 46.1
2140 Male, age 76, both hemispheres 29.5
Pretectal area
nTPM: 57.3
2316 Male, age 76, right hemisphere 80.1
1815 Male, age 53, unknown 77.4
1817 Female, age 42, unknown 69.8
2007 Male, age 72, unknown 68.5
2273 Male, age 74, both hemispheres 54.3
2667 Female, age 75, unknown 51.2
2825 Male, age 18, unknown 51.2
2224 Female, age 72, unknown 48.1
2407 Male, age 75, both hemispheres 44.3
1816 Male, age 51, unknown 43.2
1944 Female, age 72, unknown 41.9
Red nucleus
nTPM: 118.1
1821 Female, age 72, unknown 149.5
1904 Male, age 53, unknown 149.3
1865 Male, age 51, unknown 141.4
2503 Female, age 72, unknown 133.2
2823 Male, age 76, right hemisphere 130.1
2227 Male, age 72, unknown 127.1
1954 Female, age 42, unknown 125.2
2769 Male, age 72, unknown 123.8
2785 Male, age 18, unknown 117.4
2588 Male, age 74, left hemisphere 84.0
2725 Female, age 75, unknown 81.4
2584 Male, age 75, left hemisphere 55.2
Substantia nigra
nTPM: 71.7
2409 Female, age 72, unknown 90.3
1851 Male, age 51, unknown 85.0
1889 Female, age 72, unknown 79.2
2241 Male, age 72, unknown 78.7
2590 Female, age 75, unknown 72.7
1916 Female, age 42, unknown 71.8
2583 Male, age 75, right hemisphere 65.3
2699 Male, age 18, unknown 60.2
1941 Male, age 53, unknown 58.8
2665 Male, age 74, both hemispheres 55.1
Superior colliculus
nTPM: 69.3
1895 Male, age 76, right hemisphere 90.1
1913 Female, age 42, unknown 88.4
1995 Male, age 72, unknown 88.3
2587 Male, age 74, left hemisphere 83.1
2668 Female, age 75, unknown 82.8
1839 Male, age 51, unknown 71.9
1796 Male, age 53, unknown 58.1
2261 Male, age 18, unknown 50.9
2087 Female, age 72, unknown 48.9
2664 Male, age 75, both hemispheres 31.0
Ventral tegmental area
nTPM: 78.2
2410 Female, age 72, unknown 105.8
2223 Female, age 72, unknown 97.4
2218 Male, age 76, both hemispheres 75.0
1915 Female, age 42, unknown 68.6
1942 Male, age 51, unknown 66.5
2021 Male, age 53, unknown 55.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 18.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.1
Samples: 183

Max nTPM: 52.4
Min nTPM: 5.2
Std nTPM: 8.0
Median nTPM: 16.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 52.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 48.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 44.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 44.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 43.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 39.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 38.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 37.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 37.3
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 35.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 35.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 278.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 278.7
FF:10158-103A5 76 years, female 278.7

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 95.4
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 95.4
Samples: 1

Max nTPM: 95.4
Min nTPM: 95.4
Sample A 95.4
Midbrain
nTPM: 47.2
Samples: 1

Max nTPM: 47.2
Min nTPM: 47.2
Sample A 47.2
Superior colliculi
nTPM: 67.6
Samples: 1

Max nTPM: 67.6
Min nTPM: 67.6
Sample A 67.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 82.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 76.1
Samples: 3

Max nTPM: 96.3
Min nTPM: 59.1
Sample A Female 96.3
Sample B Female 59.1
Sample C Male 72.8
Midbrain
nTPM: 67.5
Samples: 3

Max nTPM: 90.6
Min nTPM: 51.4
Sample B Female 90.6
Sample C Male 51.4
Sample D Male 60.6
Periaqueductal gray
nTPM: 62.1
Samples: 3

Max nTPM: 78.0
Min nTPM: 50.3
Sample B Female 78.0
Sample C Male 50.3
Sample D Male 57.9
Superior colliculi
nTPM: 82.9
Samples: 4

Max nTPM: 96.2
Min nTPM: 64.0
Sample A Female 92.3
Sample B Female 96.2
Sample C Male 64.0
Sample D Male 78.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 42.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 42.1
Samples: 4

Max nTPM: 46.6
Min nTPM: 36.4
Sample A 36.4
Sample B 39.8
Sample C 45.6
Sample D 46.6

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 69.8
Rat sample Sample description nTPM
Midbrain
nTPM: 69.9
Samples: 4

Max nTPM: 72.2
Min nTPM: 65.5
Sample A 70.9
Sample A 70.8
Sample A 65.5
Sample A 72.2

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut and Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo