A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.2
nTPM
Monaco:
46.8
nTPM
Schmiedel:
13.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.2
HPA sample
nTPM
Classical monocyte nTPM: 16.2
Samples: 6
Max nTPM: 24.2
Min nTPM: 9.8
P10809_1003
13.7
P10809_1020
21.1
P10809_1039
24.2
P10809_1058
13.4
P10809_1080
15.2
P10809_1107
9.8
Intermediate monocyte nTPM: 9.4
Samples: 6
Max nTPM: 13.5
Min nTPM: 3.5
P10809_1004
9.7
P10809_1023
7.0
P10809_1042
12.2
P10809_1061
13.5
P10809_1081
10.5
P10809_1108
3.5
Non-classical monocyte nTPM: 4.1
Samples: 5
Max nTPM: 5.8
Min nTPM: 0.1
P10809_1005
5.5
P10809_1053
5.8
P10809_1072
0.1
P10809_1082
5.2
P10809_1109
4.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
46.8
Monaco sample
nTPM
Classical monocyte nTPM: 46.8
Samples: 4
Max nTPM: 60.2
Min nTPM: 32.4
RHH5313_R3680
45.6
RHH5221_R3593
49.1
RHH5250_R3622
32.4
RHH5279_R3651
60.2
Intermediate monocyte nTPM: 16.1
Samples: 4
Max nTPM: 22.2
Min nTPM: 7.6
RHH5314_R3681
18.3
RHH5222_R3594
16.2
RHH5251_R3623
7.6
RHH5280_R3652
22.2
Non-classical monocyte nTPM: 13.2
Samples: 4
Max nTPM: 19.6
Min nTPM: 8.1
RHH5315_R3682
10.3
RHH5223_R3595
19.6
RHH5252_R3624
8.1
RHH5281_R3653
14.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.4
Schmiedel sample id
TPM
Classical monocyte TPM: 13.4
Samples: 91
Max TPM: 22.4
Min TPM: 6.2
MONOCYTES_1
22.4
MONOCYTES_2
21.6
MONOCYTES_3
20.5
MONOCYTES_4
20.2
MONOCYTES_5
18.8
MONOCYTES_6
18.5
MONOCYTES_7
18.0
MONOCYTES_8
17.8
MONOCYTES_9
17.4
MONOCYTES_10
17.3
MONOCYTES_11
17.2
MONOCYTES_12
17.2
MONOCYTES_13
17.2
MONOCYTES_14
17.0
MONOCYTES_15
16.9
MONOCYTES_16
16.9
MONOCYTES_17
16.3
MONOCYTES_18
16.3
MONOCYTES_19
16.3
MONOCYTES_20
16.1
MONOCYTES_21
15.8
MONOCYTES_22
15.6
MONOCYTES_23
15.6
MONOCYTES_24
15.6
MONOCYTES_25
15.5
MONOCYTES_26
14.9
MONOCYTES_27
14.8
MONOCYTES_28
14.4
MONOCYTES_29
14.4
MONOCYTES_30
14.3
MONOCYTES_31
14.2
MONOCYTES_32
14.1
MONOCYTES_33
14.1
MONOCYTES_34
14.0
MONOCYTES_35
14.0
MONOCYTES_36
14.0
MONOCYTES_37
13.9
MONOCYTES_38
13.9
MONOCYTES_39
13.9
MONOCYTES_40
13.8
MONOCYTES_41
13.7
MONOCYTES_42
13.5
MONOCYTES_43
13.5
MONOCYTES_44
13.4
MONOCYTES_45
13.4
MONOCYTES_46
13.3
MONOCYTES_47
13.2
MONOCYTES_48
13.2
MONOCYTES_49
13.2
MONOCYTES_50
12.9
MONOCYTES_51
12.9
MONOCYTES_52
12.8
MONOCYTES_53
12.5
MONOCYTES_54
12.4
MONOCYTES_55
12.2
MONOCYTES_56
12.1
MONOCYTES_57
11.9
MONOCYTES_58
11.7
MONOCYTES_59
11.6
MONOCYTES_60
11.5
MONOCYTES_61
11.3
MONOCYTES_62
11.2
MONOCYTES_63
11.1
MONOCYTES_64
11.1
MONOCYTES_65
11.1
MONOCYTES_66
11.0
MONOCYTES_67
10.9
MONOCYTES_68
10.8
MONOCYTES_69
10.8
MONOCYTES_70
10.7
MONOCYTES_71
10.6
MONOCYTES_72
10.5
MONOCYTES_73
10.4
MONOCYTES_74
10.4
MONOCYTES_75
10.4
MONOCYTES_76
10.3
MONOCYTES_77
10.3
MONOCYTES_78
10.2
MONOCYTES_79
10.2
MONOCYTES_80
10.1
MONOCYTES_81
10.0
MONOCYTES_82
9.9
MONOCYTES_83
9.7
MONOCYTES_84
9.4
MONOCYTES_85
9.2
MONOCYTES_86
9.1
MONOCYTES_87
9.1
MONOCYTES_88
8.6
MONOCYTES_89
8.4
MONOCYTES_90
8.0
MONOCYTES_91
6.2
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Non-classical monocyte TPM: 7.4
Samples: 90
Max TPM: 16.1
Min TPM: 1.9
M2_1
16.1
M2_2
15.0
M2_3
15.0
M2_4
13.9
M2_5
13.3
M2_6
12.2
M2_7
12.1
M2_8
12.0
M2_9
12.0
M2_10
10.9
M2_11
10.8
M2_12
10.8
M2_13
10.8
M2_14
10.6
M2_15
10.6
M2_16
10.4
M2_17
10.4
M2_18
10.4
M2_19
10.3
M2_20
10.3
M2_21
10.1
M2_22
9.6
M2_23
9.5
M2_24
9.5
M2_25
9.5
M2_26
9.4
M2_27
9.2
M2_28
8.8
M2_29
8.7
M2_30
8.4
M2_31
7.9
M2_32
7.7
M2_33
7.7
M2_34
7.7
M2_35
7.6
M2_36
7.3
M2_37
7.3
M2_38
7.3
M2_39
7.3
M2_40
7.2
M2_41
7.1
M2_42
7.1
M2_43
7.1
M2_44
6.9
M2_45
6.9
M2_46
6.8
M2_47
6.8
M2_48
6.7
M2_49
6.7
M2_50
6.4
M2_51
6.3
M2_52
6.3
M2_53
6.2
M2_54
6.2
M2_55
6.1
M2_56
6.1
M2_57
6.0
M2_58
5.9
M2_59
5.8
M2_60
5.7
M2_61
5.6
M2_62
5.6
M2_63
5.6
M2_64
5.5
M2_65
5.4
M2_66
5.4
M2_67
5.3
M2_68
5.1
M2_69
5.1
M2_70
4.6
M2_71
4.6
M2_72
4.6
M2_73
4.5
M2_74
4.5
M2_75
4.4
M2_76
4.3
M2_77
4.3
M2_78
4.0
M2_79
3.9
M2_80
3.8
M2_81
3.8
M2_82
3.8
M2_83
3.6
M2_84
3.5
M2_85
3.3
M2_86
3.2
M2_87
3.2
M2_88
2.8
M2_89
2.5
M2_90
1.9
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