A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.3
nTPM
Monaco:
2.6
nTPM
Schmiedel:
28.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.3
HPA sample
nTPM
Classical monocyte nTPM: 0.3
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.1
P10809_1003
0.4
P10809_1020
0.2
P10809_1039
0.1
P10809_1058
0.3
P10809_1080
0.3
P10809_1107
0.4
Intermediate monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1004
0.2
P10809_1023
0.0
P10809_1042
0.1
P10809_1061
0.2
P10809_1081
0.1
P10809_1108
0.4
Non-classical monocyte nTPM: 0.1
Samples: 5
Max nTPM: 0.4
Min nTPM: 0.0
P10809_1005
0.0
P10809_1053
0.4
P10809_1072
0.0
P10809_1082
0.2
P10809_1109
0.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.6
Monaco sample
nTPM
Classical monocyte nTPM: 0.4
Samples: 4
Max nTPM: 1.6
Min nTPM: 0.0
RHH5313_R3680
0.0
RHH5221_R3593
1.6
RHH5250_R3622
0.0
RHH5279_R3651
0.0
Intermediate monocyte nTPM: 0.8
Samples: 4
Max nTPM: 2.8
Min nTPM: 0.0
RHH5314_R3681
0.1
RHH5222_R3594
0.4
RHH5251_R3623
2.8
RHH5280_R3652
0.0
Non-classical monocyte nTPM: 2.6
Samples: 4
Max nTPM: 5.1
Min nTPM: 1.3
RHH5315_R3682
1.7
RHH5223_R3595
1.3
RHH5252_R3624
5.1
RHH5281_R3653
2.4
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.7
Schmiedel sample id
TPM
Classical monocyte TPM: 28.7
Samples: 91
Max TPM: 57.9
Min TPM: 8.9
MONOCYTES_1
57.9
MONOCYTES_2
56.3
MONOCYTES_3
50.5
MONOCYTES_4
50.2
MONOCYTES_5
47.5
MONOCYTES_6
47.3
MONOCYTES_7
45.9
MONOCYTES_8
45.3
MONOCYTES_9
44.9
MONOCYTES_10
44.7
MONOCYTES_11
44.1
MONOCYTES_12
43.7
MONOCYTES_13
43.5
MONOCYTES_14
42.0
MONOCYTES_15
41.3
MONOCYTES_16
41.1
MONOCYTES_17
40.9
MONOCYTES_18
40.9
MONOCYTES_19
40.4
MONOCYTES_20
39.5
MONOCYTES_21
39.0
MONOCYTES_22
38.9
MONOCYTES_23
38.7
MONOCYTES_24
38.6
MONOCYTES_25
38.4
MONOCYTES_26
38.4
MONOCYTES_27
38.3
MONOCYTES_28
38.2
MONOCYTES_29
38.0
MONOCYTES_30
37.9
MONOCYTES_31
37.9
MONOCYTES_32
34.6
MONOCYTES_33
34.5
MONOCYTES_34
33.8
MONOCYTES_35
33.3
MONOCYTES_36
32.4
MONOCYTES_37
31.9
MONOCYTES_38
31.5
MONOCYTES_39
31.5
MONOCYTES_40
28.8
MONOCYTES_41
28.8
MONOCYTES_42
28.7
MONOCYTES_43
28.7
MONOCYTES_44
28.3
MONOCYTES_45
28.1
MONOCYTES_46
28.0
MONOCYTES_47
25.8
MONOCYTES_48
25.7
MONOCYTES_49
25.3
MONOCYTES_50
25.2
MONOCYTES_51
24.5
MONOCYTES_52
24.4
MONOCYTES_53
23.6
MONOCYTES_54
22.9
MONOCYTES_55
22.8
MONOCYTES_56
22.4
MONOCYTES_57
22.3
MONOCYTES_58
22.3
MONOCYTES_59
21.9
MONOCYTES_60
21.9
MONOCYTES_61
21.3
MONOCYTES_62
21.0
MONOCYTES_63
20.8
MONOCYTES_64
20.8
MONOCYTES_65
20.5
MONOCYTES_66
20.1
MONOCYTES_67
19.9
MONOCYTES_68
19.3
MONOCYTES_69
19.1
MONOCYTES_70
19.1
MONOCYTES_71
18.6
MONOCYTES_72
18.5
MONOCYTES_73
18.4
MONOCYTES_74
17.5
MONOCYTES_75
17.1
MONOCYTES_76
16.9
MONOCYTES_77
15.0
MONOCYTES_78
14.9
MONOCYTES_79
14.7
MONOCYTES_80
13.7
MONOCYTES_81
13.7
MONOCYTES_82
13.6
MONOCYTES_83
12.5
MONOCYTES_84
11.8
MONOCYTES_85
11.1
MONOCYTES_86
10.5
MONOCYTES_87
10.2
MONOCYTES_88
10.2
MONOCYTES_89
9.9
MONOCYTES_90
9.4
MONOCYTES_91
8.9
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Non-classical monocyte TPM: 23.4
Samples: 90
Max TPM: 52.4
Min TPM: 3.3
M2_1
52.4
M2_2
49.6
M2_3
49.1
M2_4
48.4
M2_5
47.8
M2_6
47.4
M2_7
40.9
M2_8
40.8
M2_9
39.5
M2_10
37.1
M2_11
36.1
M2_12
35.7
M2_13
34.7
M2_14
34.4
M2_15
34.2
M2_16
33.0
M2_17
32.5
M2_18
32.4
M2_19
32.4
M2_20
32.4
M2_21
32.3
M2_22
31.7
M2_23
31.5
M2_24
31.4
M2_25
31.1
M2_26
31.1
M2_27
29.9
M2_28
29.4
M2_29
29.2
M2_30
28.7
M2_31
26.9
M2_32
26.9
M2_33
26.6
M2_34
26.3
M2_35
26.1
M2_36
25.5
M2_37
25.5
M2_38
25.0
M2_39
24.8
M2_40
24.8
M2_41
24.7
M2_42
24.0
M2_43
24.0
M2_44
23.9
M2_45
23.8
M2_46
23.4
M2_47
23.2
M2_48
23.1
M2_49
22.8
M2_50
22.3
M2_51
21.9
M2_52
21.1
M2_53
21.0
M2_54
20.6
M2_55
20.6
M2_56
20.1
M2_57
19.3
M2_58
18.8
M2_59
18.7
M2_60
18.7
M2_61
17.8
M2_62
17.6
M2_63
16.7
M2_64
16.2
M2_65
15.5
M2_66
15.3
M2_67
14.7
M2_68
13.9
M2_69
13.3
M2_70
12.9
M2_71
11.9
M2_72
11.7
M2_73
11.4
M2_74
11.3
M2_75
10.2
M2_76
9.4
M2_77
8.9
M2_78
8.6
M2_79
8.5
M2_80
8.4
M2_81
8.0
M2_82
7.8
M2_83
7.8
M2_84
7.3
M2_85
6.9
M2_86
6.7
M2_87
5.5
M2_88
4.4
M2_89
3.4
M2_90
3.3
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