A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.9
nTPM
Monaco:
71.0
nTPM
Schmiedel:
51.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.9
HPA sample
nTPM
Memory B-cell nTPM: 10.9
Samples: 6
Max nTPM: 14.5
Min nTPM: 8.7
P10809_1017
12.0
P10809_1025
8.7
P10809_1044
10.7
P10809_1063
10.6
P10809_1092
14.5
P10809_1105
8.8
Naive B-cell nTPM: 10.4
Samples: 6
Max nTPM: 16.2
Min nTPM: 2.6
P10809_1011
10.3
P10809_1029
15.0
P10809_1048
2.6
P10809_1067
6.5
P10809_1091
11.8
P10809_1104
16.2
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 63.9
Samples: 4
Max nTPM: 73.5
Min nTPM: 60.5
RHH5310_R3677
60.5
RHH5218_R3590
60.5
RHH5247_R3619
73.5
RHH5276_R3648
61.1
Naive B-cell nTPM: 62.9
Samples: 4
Max nTPM: 79.5
Min nTPM: 53.7
RHH5308_R3675
59.4
RHH5216_R3588
79.5
RHH5245_R3617
53.7
RHH5274_R3646
59.0
Non-switched memory B-cell nTPM: 54.3
Samples: 4
Max nTPM: 76.2
Min nTPM: 32.7
RHH5309_R3676
56.8
RHH5217_R3589
51.5
RHH5246_R3618
76.2
RHH5275_R3647
32.7
Plasmablast nTPM: 64.2
Samples: 4
Max nTPM: 79.7
Min nTPM: 45.1
RHH5312_R3679
75.1
RHH5220_R3592
56.9
RHH5249_R3621
79.7
RHH5278_R3650
45.1
Switched memory B-cell nTPM: 71.0
Samples: 4
Max nTPM: 79.9
Min nTPM: 64.4
RHH5311_R3678
71.4
RHH5219_R3591
68.3
RHH5248_R3620
79.9
RHH5277_R3649
64.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.1
Schmiedel sample id
TPM
Naive B-cell TPM: 51.1
Samples: 91
Max TPM: 74.6
Min TPM: 17.8
B_CELL_NAIVE_1
74.6
B_CELL_NAIVE_2
72.3
B_CELL_NAIVE_3
71.4
B_CELL_NAIVE_4
71.1
B_CELL_NAIVE_5
70.0
B_CELL_NAIVE_6
68.7
B_CELL_NAIVE_7
68.5
B_CELL_NAIVE_8
67.5
B_CELL_NAIVE_9
66.1
B_CELL_NAIVE_10
65.9
B_CELL_NAIVE_11
64.3
B_CELL_NAIVE_12
63.1
B_CELL_NAIVE_13
62.8
B_CELL_NAIVE_14
62.2
B_CELL_NAIVE_15
62.2
B_CELL_NAIVE_16
62.1
B_CELL_NAIVE_17
61.9
B_CELL_NAIVE_18
61.7
B_CELL_NAIVE_19
60.6
B_CELL_NAIVE_20
60.5
B_CELL_NAIVE_21
60.5
B_CELL_NAIVE_22
60.4
B_CELL_NAIVE_23
60.3
B_CELL_NAIVE_24
60.1
B_CELL_NAIVE_25
59.4
B_CELL_NAIVE_26
59.2
B_CELL_NAIVE_27
59.1
B_CELL_NAIVE_28
58.0
B_CELL_NAIVE_29
57.8
B_CELL_NAIVE_30
57.7
B_CELL_NAIVE_31
57.5
B_CELL_NAIVE_32
57.4
B_CELL_NAIVE_33
57.0
B_CELL_NAIVE_34
56.4
B_CELL_NAIVE_35
56.3
B_CELL_NAIVE_36
56.0
B_CELL_NAIVE_37
55.7
B_CELL_NAIVE_38
55.6
B_CELL_NAIVE_39
55.4
B_CELL_NAIVE_40
55.1
B_CELL_NAIVE_41
54.2
B_CELL_NAIVE_42
54.1
B_CELL_NAIVE_43
53.9
B_CELL_NAIVE_44
53.5
B_CELL_NAIVE_45
53.5
B_CELL_NAIVE_46
52.7
B_CELL_NAIVE_47
52.3
B_CELL_NAIVE_48
52.0
B_CELL_NAIVE_49
51.6
B_CELL_NAIVE_50
51.5
B_CELL_NAIVE_51
50.8
B_CELL_NAIVE_52
50.6
B_CELL_NAIVE_53
50.4
B_CELL_NAIVE_54
50.4
B_CELL_NAIVE_55
50.3
B_CELL_NAIVE_56
50.0
B_CELL_NAIVE_57
49.8
B_CELL_NAIVE_58
48.0
B_CELL_NAIVE_59
47.9
B_CELL_NAIVE_60
47.5
B_CELL_NAIVE_61
47.0
B_CELL_NAIVE_62
46.3
B_CELL_NAIVE_63
46.0
B_CELL_NAIVE_64
45.0
B_CELL_NAIVE_65
44.8
B_CELL_NAIVE_66
44.6
B_CELL_NAIVE_67
44.1
B_CELL_NAIVE_68
43.5
B_CELL_NAIVE_69
43.4
B_CELL_NAIVE_70
42.8
B_CELL_NAIVE_71
42.6
B_CELL_NAIVE_72
42.5
B_CELL_NAIVE_73
42.3
B_CELL_NAIVE_74
42.2
B_CELL_NAIVE_75
41.6
B_CELL_NAIVE_76
41.5
B_CELL_NAIVE_77
38.9
B_CELL_NAIVE_78
37.4
B_CELL_NAIVE_79
36.7
B_CELL_NAIVE_80
35.4
B_CELL_NAIVE_81
34.5
B_CELL_NAIVE_82
33.9
B_CELL_NAIVE_83
32.8
B_CELL_NAIVE_84
30.7
B_CELL_NAIVE_85
30.2
B_CELL_NAIVE_86
28.3
B_CELL_NAIVE_87
26.0
B_CELL_NAIVE_88
23.8
B_CELL_NAIVE_89
21.2
B_CELL_NAIVE_90
20.5
B_CELL_NAIVE_91
17.8
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