A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.2
nTPM
Monaco:
20.1
nTPM
Schmiedel:
73.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.2
HPA sample
nTPM
Classical monocyte nTPM: 0.2
Samples: 6
Max nTPM: 0.4
Min nTPM: 0.1
P10809_1003
0.4
P10809_1020
0.1
P10809_1039
0.2
P10809_1058
0.3
P10809_1080
0.1
P10809_1107
0.2
Intermediate monocyte nTPM: 0.4
Samples: 6
Max nTPM: 0.7
Min nTPM: 0.2
P10809_1004
0.7
P10809_1023
0.3
P10809_1042
0.2
P10809_1061
0.3
P10809_1081
0.3
P10809_1108
0.3
Non-classical monocyte nTPM: 1.2
Samples: 5
Max nTPM: 3.3
Min nTPM: 0.5
P10809_1005
0.9
P10809_1053
0.6
P10809_1072
3.3
P10809_1082
0.7
P10809_1109
0.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.1
Monaco sample
nTPM
Classical monocyte nTPM: 8.2
Samples: 4
Max nTPM: 9.7
Min nTPM: 6.3
RHH5313_R3680
9.7
RHH5221_R3593
8.3
RHH5250_R3622
8.4
RHH5279_R3651
6.3
Intermediate monocyte nTPM: 12.7
Samples: 4
Max nTPM: 15.7
Min nTPM: 9.6
RHH5314_R3681
10.1
RHH5222_R3594
9.6
RHH5251_R3623
15.7
RHH5280_R3652
15.4
Non-classical monocyte nTPM: 20.1
Samples: 4
Max nTPM: 24.4
Min nTPM: 14.3
RHH5315_R3682
18.1
RHH5223_R3595
24.4
RHH5252_R3624
23.4
RHH5281_R3653
14.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.4
Schmiedel sample id
TPM
Classical monocyte TPM: 18.7
Samples: 91
Max TPM: 31.8
Min TPM: 11.6
MONOCYTES_1
31.8
MONOCYTES_2
30.0
MONOCYTES_3
29.2
MONOCYTES_4
29.0
MONOCYTES_5
27.9
MONOCYTES_6
27.0
MONOCYTES_7
26.4
MONOCYTES_8
25.5
MONOCYTES_9
24.9
MONOCYTES_10
24.6
MONOCYTES_11
24.4
MONOCYTES_12
24.2
MONOCYTES_13
23.8
MONOCYTES_14
23.8
MONOCYTES_15
23.8
MONOCYTES_16
23.4
MONOCYTES_17
23.4
MONOCYTES_18
23.4
MONOCYTES_19
23.3
MONOCYTES_20
23.1
MONOCYTES_21
22.6
MONOCYTES_22
22.5
MONOCYTES_23
22.5
MONOCYTES_24
22.4
MONOCYTES_25
22.2
MONOCYTES_26
21.8
MONOCYTES_27
21.6
MONOCYTES_28
21.5
MONOCYTES_29
21.1
MONOCYTES_30
21.0
MONOCYTES_31
20.9
MONOCYTES_32
20.6
MONOCYTES_33
20.4
MONOCYTES_34
20.2
MONOCYTES_35
20.0
MONOCYTES_36
19.8
MONOCYTES_37
19.7
MONOCYTES_38
19.7
MONOCYTES_39
19.6
MONOCYTES_40
19.4
MONOCYTES_41
19.1
MONOCYTES_42
19.0
MONOCYTES_43
18.9
MONOCYTES_44
18.3
MONOCYTES_45
18.0
MONOCYTES_46
17.9
MONOCYTES_47
17.8
MONOCYTES_48
17.6
MONOCYTES_49
17.4
MONOCYTES_50
17.4
MONOCYTES_51
17.3
MONOCYTES_52
17.3
MONOCYTES_53
16.7
MONOCYTES_54
16.6
MONOCYTES_55
16.5
MONOCYTES_56
16.0
MONOCYTES_57
15.8
MONOCYTES_58
15.6
MONOCYTES_59
15.6
MONOCYTES_60
15.5
MONOCYTES_61
15.4
MONOCYTES_62
15.3
MONOCYTES_63
15.2
MONOCYTES_64
15.1
MONOCYTES_65
15.0
MONOCYTES_66
14.9
MONOCYTES_67
14.8
MONOCYTES_68
14.7
MONOCYTES_69
14.6
MONOCYTES_70
14.4
MONOCYTES_71
14.3
MONOCYTES_72
14.3
MONOCYTES_73
14.1
MONOCYTES_74
14.1
MONOCYTES_75
13.9
MONOCYTES_76
13.9
MONOCYTES_77
13.9
MONOCYTES_78
13.7
MONOCYTES_79
13.5
MONOCYTES_80
13.5
MONOCYTES_81
13.4
MONOCYTES_82
13.3
MONOCYTES_83
13.2
MONOCYTES_84
13.1
MONOCYTES_85
12.9
MONOCYTES_86
12.8
MONOCYTES_87
12.6
MONOCYTES_88
12.0
MONOCYTES_89
12.0
MONOCYTES_90
11.6
MONOCYTES_91
11.6
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Non-classical monocyte TPM: 73.4
Samples: 90
Max TPM: 116.8
Min TPM: 39.0
M2_1
116.8
M2_2
108.5
M2_3
106.0
M2_4
105.8
M2_5
104.7
M2_6
100.5
M2_7
100.0
M2_8
96.3
M2_9
94.6
M2_10
93.4
M2_11
93.3
M2_12
92.8
M2_13
91.3
M2_14
90.8
M2_15
90.8
M2_16
90.2
M2_17
88.0
M2_18
86.8
M2_19
86.1
M2_20
84.5
M2_21
84.2
M2_22
84.2
M2_23
84.1
M2_24
83.6
M2_25
83.4
M2_26
82.7
M2_27
82.1
M2_28
81.2
M2_29
80.7
M2_30
80.1
M2_31
79.7
M2_32
79.2
M2_33
78.7
M2_34
78.2
M2_35
78.0
M2_36
77.2
M2_37
77.2
M2_38
75.9
M2_39
75.2
M2_40
75.2
M2_41
74.6
M2_42
74.0
M2_43
72.9
M2_44
72.3
M2_45
71.9
M2_46
71.4
M2_47
70.3
M2_48
69.9
M2_49
69.8
M2_50
69.7
M2_51
69.4
M2_52
68.8
M2_53
68.5
M2_54
67.9
M2_55
67.5
M2_56
66.4
M2_57
65.4
M2_58
64.0
M2_59
63.8
M2_60
63.3
M2_61
63.2
M2_62
63.0
M2_63
63.0
M2_64
62.3
M2_65
62.0
M2_66
61.3
M2_67
60.5
M2_68
60.1
M2_69
59.2
M2_70
59.1
M2_71
59.0
M2_72
58.8
M2_73
58.7
M2_74
58.4
M2_75
58.0
M2_76
57.4
M2_77
57.2
M2_78
57.0
M2_79
56.9
M2_80
56.4
M2_81
56.4
M2_82
55.6
M2_83
53.7
M2_84
52.8
M2_85
52.7
M2_86
51.1
M2_87
51.1
M2_88
49.9
M2_89
45.5
M2_90
39.0
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