A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.1
nTPM
Monaco:
66.1
nTPM
Schmiedel:
29.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.1
HPA sample
nTPM
Classical monocyte nTPM: 7.1
Samples: 6
Max nTPM: 10.2
Min nTPM: 4.9
P10809_1003
10.2
P10809_1020
8.8
P10809_1039
4.9
P10809_1058
7.2
P10809_1080
6.2
P10809_1107
5.3
Intermediate monocyte nTPM: 5.1
Samples: 6
Max nTPM: 8.8
Min nTPM: 2.7
P10809_1004
4.9
P10809_1023
2.7
P10809_1042
8.8
P10809_1061
5.0
P10809_1081
5.9
P10809_1108
3.4
Non-classical monocyte nTPM: 3.4
Samples: 5
Max nTPM: 6.1
Min nTPM: 0.5
P10809_1005
6.1
P10809_1053
2.9
P10809_1072
0.5
P10809_1082
3.9
P10809_1109
3.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.1
Monaco sample
nTPM
Classical monocyte nTPM: 66.1
Samples: 4
Max nTPM: 81.3
Min nTPM: 54.9
RHH5313_R3680
72.8
RHH5221_R3593
54.9
RHH5250_R3622
81.3
RHH5279_R3651
55.3
Intermediate monocyte nTPM: 42.7
Samples: 4
Max nTPM: 54.0
Min nTPM: 34.4
RHH5314_R3681
34.4
RHH5222_R3594
43.0
RHH5251_R3623
39.4
RHH5280_R3652
54.0
Non-classical monocyte nTPM: 29.6
Samples: 4
Max nTPM: 34.2
Min nTPM: 21.8
RHH5315_R3682
32.1
RHH5223_R3595
21.8
RHH5252_R3624
30.2
RHH5281_R3653
34.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.0
Schmiedel sample id
TPM
Classical monocyte TPM: 29.0
Samples: 91
Max TPM: 36.5
Min TPM: 21.9
MONOCYTES_1
36.5
MONOCYTES_2
35.9
MONOCYTES_3
35.5
MONOCYTES_4
34.7
MONOCYTES_5
34.3
MONOCYTES_6
33.6
MONOCYTES_7
33.3
MONOCYTES_8
33.3
MONOCYTES_9
33.0
MONOCYTES_10
32.8
MONOCYTES_11
32.5
MONOCYTES_12
32.5
MONOCYTES_13
32.5
MONOCYTES_14
32.3
MONOCYTES_15
32.2
MONOCYTES_16
32.0
MONOCYTES_17
31.9
MONOCYTES_18
31.7
MONOCYTES_19
31.5
MONOCYTES_20
31.5
MONOCYTES_21
31.4
MONOCYTES_22
31.4
MONOCYTES_23
31.3
MONOCYTES_24
31.3
MONOCYTES_25
31.0
MONOCYTES_26
30.9
MONOCYTES_27
30.9
MONOCYTES_28
30.8
MONOCYTES_29
30.8
MONOCYTES_30
30.8
MONOCYTES_31
30.8
MONOCYTES_32
30.5
MONOCYTES_33
30.3
MONOCYTES_34
30.3
MONOCYTES_35
29.9
MONOCYTES_36
29.9
MONOCYTES_37
29.8
MONOCYTES_38
29.8
MONOCYTES_39
29.6
MONOCYTES_40
29.5
MONOCYTES_41
29.3
MONOCYTES_42
29.2
MONOCYTES_43
29.2
MONOCYTES_44
29.2
MONOCYTES_45
29.0
MONOCYTES_46
28.9
MONOCYTES_47
28.9
MONOCYTES_48
28.8
MONOCYTES_49
28.8
MONOCYTES_50
28.4
MONOCYTES_51
28.2
MONOCYTES_52
28.2
MONOCYTES_53
28.2
MONOCYTES_54
27.9
MONOCYTES_55
27.8
MONOCYTES_56
27.8
MONOCYTES_57
27.7
MONOCYTES_58
27.5
MONOCYTES_59
27.4
MONOCYTES_60
27.4
MONOCYTES_61
27.3
MONOCYTES_62
27.2
MONOCYTES_63
27.1
MONOCYTES_64
27.1
MONOCYTES_65
27.0
MONOCYTES_66
27.0
MONOCYTES_67
27.0
MONOCYTES_68
27.0
MONOCYTES_69
26.6
MONOCYTES_70
26.4
MONOCYTES_71
26.3
MONOCYTES_72
26.3
MONOCYTES_73
26.3
MONOCYTES_74
26.0
MONOCYTES_75
26.0
MONOCYTES_76
26.0
MONOCYTES_77
26.0
MONOCYTES_78
25.9
MONOCYTES_79
25.8
MONOCYTES_80
25.7
MONOCYTES_81
25.7
MONOCYTES_82
25.5
MONOCYTES_83
25.3
MONOCYTES_84
25.2
MONOCYTES_85
25.2
MONOCYTES_86
25.1
MONOCYTES_87
24.7
MONOCYTES_88
23.5
MONOCYTES_89
22.7
MONOCYTES_90
22.6
MONOCYTES_91
21.9
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Non-classical monocyte TPM: 10.8
Samples: 90
Max TPM: 17.7
Min TPM: 7.0
M2_1
17.7
M2_2
16.2
M2_3
14.7
M2_4
13.5
M2_5
13.4
M2_6
13.3
M2_7
13.2
M2_8
13.0
M2_9
12.9
M2_10
12.7
M2_11
12.7
M2_12
12.5
M2_13
12.4
M2_14
12.4
M2_15
12.2
M2_16
12.2
M2_17
12.2
M2_18
12.1
M2_19
12.1
M2_20
12.1
M2_21
12.1
M2_22
12.0
M2_23
11.8
M2_24
11.8
M2_25
11.7
M2_26
11.7
M2_27
11.7
M2_28
11.7
M2_29
11.7
M2_30
11.6
M2_31
11.6
M2_32
11.6
M2_33
11.5
M2_34
11.4
M2_35
11.3
M2_36
11.3
M2_37
11.3
M2_38
11.3
M2_39
11.3
M2_40
11.1
M2_41
11.0
M2_42
10.9
M2_43
10.9
M2_44
10.8
M2_45
10.7
M2_46
10.5
M2_47
10.5
M2_48
10.5
M2_49
10.4
M2_50
10.2
M2_51
10.2
M2_52
10.1
M2_53
10.1
M2_54
10.1
M2_55
10.0
M2_56
10.0
M2_57
10.0
M2_58
9.9
M2_59
9.9
M2_60
9.8
M2_61
9.8
M2_62
9.8
M2_63
9.7
M2_64
9.7
M2_65
9.7
M2_66
9.6
M2_67
9.6
M2_68
9.5
M2_69
9.5
M2_70
9.5
M2_71
9.5
M2_72
9.4
M2_73
9.4
M2_74
9.2
M2_75
9.1
M2_76
8.9
M2_77
8.9
M2_78
8.9
M2_79
8.7
M2_80
8.5
M2_81
8.5
M2_82
8.5
M2_83
8.4
M2_84
8.2
M2_85
8.1
M2_86
8.0
M2_87
7.9
M2_88
7.7
M2_89
7.7
M2_90
7.0
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