A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.1
nTPM
Monaco:
37.9
nTPM
Schmiedel:
26.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.1
HPA sample
nTPM
Classical monocyte nTPM: 4.3
Samples: 6
Max nTPM: 5.9
Min nTPM: 2.4
P10809_1003
5.6
P10809_1020
5.9
P10809_1039
5.6
P10809_1058
2.4
P10809_1080
3.3
P10809_1107
3.2
Intermediate monocyte nTPM: 6.5
Samples: 6
Max nTPM: 12.2
Min nTPM: 2.2
P10809_1004
6.8
P10809_1023
9.4
P10809_1042
12.2
P10809_1061
2.2
P10809_1081
3.6
P10809_1108
4.7
Non-classical monocyte nTPM: 10.1
Samples: 5
Max nTPM: 20.9
Min nTPM: 4.3
P10809_1005
9.3
P10809_1053
11.3
P10809_1072
20.9
P10809_1082
4.3
P10809_1109
4.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.9
Monaco sample
nTPM
Classical monocyte nTPM: 15.0
Samples: 4
Max nTPM: 22.1
Min nTPM: 10.3
RHH5313_R3680
12.4
RHH5221_R3593
15.3
RHH5250_R3622
22.1
RHH5279_R3651
10.3
Intermediate monocyte nTPM: 24.8
Samples: 4
Max nTPM: 38.0
Min nTPM: 12.5
RHH5314_R3681
38.0
RHH5222_R3594
21.6
RHH5251_R3623
12.5
RHH5280_R3652
27.1
Non-classical monocyte nTPM: 37.9
Samples: 4
Max nTPM: 50.2
Min nTPM: 27.9
RHH5315_R3682
50.2
RHH5223_R3595
43.6
RHH5252_R3624
27.9
RHH5281_R3653
29.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.8
Schmiedel sample id
TPM
Classical monocyte TPM: 13.0
Samples: 91
Max TPM: 22.9
Min TPM: 8.0
MONOCYTES_1
22.9
MONOCYTES_2
19.2
MONOCYTES_3
19.1
MONOCYTES_4
18.8
MONOCYTES_5
18.6
MONOCYTES_6
18.0
MONOCYTES_7
17.6
MONOCYTES_8
16.8
MONOCYTES_9
16.7
MONOCYTES_10
16.0
MONOCYTES_11
16.0
MONOCYTES_12
15.8
MONOCYTES_13
15.8
MONOCYTES_14
15.7
MONOCYTES_15
15.7
MONOCYTES_16
15.0
MONOCYTES_17
15.0
MONOCYTES_18
14.9
MONOCYTES_19
14.9
MONOCYTES_20
14.6
MONOCYTES_21
14.6
MONOCYTES_22
14.4
MONOCYTES_23
14.4
MONOCYTES_24
14.4
MONOCYTES_25
14.3
MONOCYTES_26
14.3
MONOCYTES_27
14.1
MONOCYTES_28
14.1
MONOCYTES_29
14.1
MONOCYTES_30
13.9
MONOCYTES_31
13.6
MONOCYTES_32
13.5
MONOCYTES_33
13.5
MONOCYTES_34
13.5
MONOCYTES_35
13.4
MONOCYTES_36
13.4
MONOCYTES_37
13.4
MONOCYTES_38
13.4
MONOCYTES_39
13.3
MONOCYTES_40
13.2
MONOCYTES_41
13.1
MONOCYTES_42
13.1
MONOCYTES_43
12.9
MONOCYTES_44
12.7
MONOCYTES_45
12.7
MONOCYTES_46
12.6
MONOCYTES_47
12.4
MONOCYTES_48
12.3
MONOCYTES_49
12.3
MONOCYTES_50
12.3
MONOCYTES_51
12.3
MONOCYTES_52
12.2
MONOCYTES_53
12.2
MONOCYTES_54
12.1
MONOCYTES_55
12.1
MONOCYTES_56
12.1
MONOCYTES_57
12.0
MONOCYTES_58
12.0
MONOCYTES_59
12.0
MONOCYTES_60
11.8
MONOCYTES_61
11.8
MONOCYTES_62
11.8
MONOCYTES_63
11.6
MONOCYTES_64
11.4
MONOCYTES_65
11.4
MONOCYTES_66
11.4
MONOCYTES_67
11.4
MONOCYTES_68
11.3
MONOCYTES_69
11.2
MONOCYTES_70
11.2
MONOCYTES_71
11.1
MONOCYTES_72
11.1
MONOCYTES_73
10.9
MONOCYTES_74
10.8
MONOCYTES_75
10.8
MONOCYTES_76
10.8
MONOCYTES_77
10.6
MONOCYTES_78
10.5
MONOCYTES_79
10.4
MONOCYTES_80
10.1
MONOCYTES_81
10.1
MONOCYTES_82
10.0
MONOCYTES_83
10.0
MONOCYTES_84
10.0
MONOCYTES_85
9.4
MONOCYTES_86
9.4
MONOCYTES_87
9.3
MONOCYTES_88
9.2
MONOCYTES_89
9.0
MONOCYTES_90
8.1
MONOCYTES_91
8.0
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Non-classical monocyte TPM: 26.8
Samples: 90
Max TPM: 37.3
Min TPM: 16.8
M2_1
37.3
M2_2
35.8
M2_3
35.8
M2_4
35.3
M2_5
35.3
M2_6
35.0
M2_7
34.6
M2_8
34.6
M2_9
34.3
M2_10
33.6
M2_11
33.3
M2_12
33.2
M2_13
33.0
M2_14
32.5
M2_15
32.2
M2_16
31.7
M2_17
31.7
M2_18
31.6
M2_19
31.0
M2_20
31.0
M2_21
30.0
M2_22
29.8
M2_23
29.8
M2_24
29.7
M2_25
29.6
M2_26
29.4
M2_27
29.2
M2_28
29.1
M2_29
29.1
M2_30
28.6
M2_31
28.4
M2_32
28.4
M2_33
28.3
M2_34
28.2
M2_35
27.9
M2_36
27.8
M2_37
27.6
M2_38
27.6
M2_39
27.2
M2_40
27.1
M2_41
27.1
M2_42
27.1
M2_43
26.9
M2_44
26.7
M2_45
26.3
M2_46
26.3
M2_47
26.2
M2_48
25.8
M2_49
25.7
M2_50
25.6
M2_51
25.5
M2_52
25.5
M2_53
25.4
M2_54
25.3
M2_55
25.2
M2_56
24.9
M2_57
24.8
M2_58
24.7
M2_59
24.7
M2_60
24.6
M2_61
24.5
M2_62
24.5
M2_63
24.2
M2_64
24.0
M2_65
24.0
M2_66
23.9
M2_67
23.6
M2_68
23.1
M2_69
23.1
M2_70
23.0
M2_71
22.9
M2_72
22.8
M2_73
22.6
M2_74
22.2
M2_75
21.9
M2_76
21.9
M2_77
21.5
M2_78
21.3
M2_79
21.3
M2_80
21.1
M2_81
20.7
M2_82
20.5
M2_83
20.0
M2_84
20.0
M2_85
19.9
M2_86
19.4
M2_87
19.2
M2_88
18.8
M2_89
18.8
M2_90
16.8
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