We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SNAP91
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SNAP91
TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:85.1 nTPM
GTEx:85.1 nTPM
FANTOM5:44.8 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 85.1
Samples: 105

Max nTPM: 115.0
Min nTPM: 55.6
Std nTPM: 12.5
Median nTPM:
324_1 76 years, male 115.0
32_1 67 years, male 114.7
6_1 73 years, female 114.5
142_1 61 years, female 111.2
490_1 67 years, female 110.5
115_1 83 years, male 110.4
162_1 79 years, female 109.8
81_1 67 years, male 108.6
139_1 64 years, female 102.9
89_1 63 years, male 102.6
149_1 88 years, male 101.5
153_1 70 years, female 101.5
99_1 64 years, male 98.7
117_1 61 years, male 98.3
126_1 63 years, male 97.4
172_1 72 years, female 96.7
120_1 70 years, female 96.5
491_1 89 years, female 96.2
466_1 57 years, female 94.8
414_1 84 years, female 94.6
9_1 66 years, female 94.3
447_1 81 years, male 94.3
413_1 59 years, female 93.9
348_1 84 years, male 93.8
35_1 74 years, female 93.6
415_1 77 years, female 93.0
2_1 77 years, female 92.4
243_1 75 years, male 92.4
43_1 64 years, female 92.1
119_1 70 years, female 92.1
517_1 88 years, male 91.7
352_1 62 years, male 91.6
145_1 84 years, male 91.4
315_1 62 years, female 91.3
251_1 78 years, male 91.2
468_1 89 years, male 90.7
109_1 81 years, female 90.5
347_1 72 years, male 90.5
349_1 83 years, male 90.1
396_1 62 years, male 89.9
350_1 84 years, female 89.2
18_1 88 years, male 89.1
217_1 76 years, male 88.9
229_1 69 years, female 86.9
335_1 73 years, female 86.9
17_1 71 years, male 86.4
313_1 79 years, female 85.7
355_1 70 years, female 85.5
42_1 85 years, male 85.2
526_1 61 years, male 83.8
354_1 81 years, female 83.4
286_1 68 years, female 83.2
503_1 68 years, male 83.2
404_1 82 years, female 83.1
265_1 87 years, male 82.6
137_1 83 years, male 82.2
386_1 76 years, male 82.2
316_1 62 years, male 82.1
353_1 82 years, female 81.6
311_1 78 years, male 81.5
189_1 76 years, male 81.3
291_1 76 years, male 80.9
321_1 62 years, female 80.9
379_1 60 years, male 80.7
288_1 66 years, female 80.5
292_1 71 years, male 80.3
425_1 59 years, female 80.2
322_1 76 years, male 80.1
376_1 75 years, female 80.1
499_1 55 years, female 79.8
377_1 82 years, female 79.6
293_1 68 years, female 79.2
501_1 88 years, male 78.8
506_1 65 years, male 78.7
406_1 79 years, male 77.9
4_1 88 years, female 77.0
480_1 63 years, male 77.0
254_1 77 years, female 76.6
319_1 81 years, male 75.9
518_1 75 years, female 75.5
351_1 91 years, male 75.3
318_1 68 years, male 75.2
314_1 67 years, male 75.1
375_1 74 years, female 75.1
389_1 86 years, female 74.9
405_1 91 years, male 73.9
177_1 74 years, male 73.5
266_1 85 years, male 73.4
173_1 67 years, male 72.6
320_1 89 years, female 72.3
452_1 88 years, female 71.7
295_1 61 years, female 71.6
317_1 60 years, male 71.6
495_1 57 years, female 70.3
394_1 75 years, female 70.2
307_1 66 years, female 69.8
356_1 87 years, female 68.9
41_1 94 years, female 67.3
264_1 73 years, female 67.0
246_1 77 years, male 65.6
384_1 83 years, male 65.2
237_1 82 years, male 64.9
308_1 70 years, female 60.8
163_1 78 years, male 58.7
218_1 71 years, female 55.6
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

44.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 44.8
FF:10030-101E3 24-65 years, mixed 44.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo