A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
59.2
nTPM
Monaco:
135.2
nTPM
Schmiedel:
60.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.2
HPA sample
nTPM
Classical monocyte nTPM: 59.2
Samples: 6
Max nTPM: 66.6
Min nTPM: 51.6
P10809_1003
55.9
P10809_1020
63.1
P10809_1039
66.6
P10809_1058
59.7
P10809_1080
58.1
P10809_1107
51.6
Intermediate monocyte nTPM: 50.5
Samples: 6
Max nTPM: 62.7
Min nTPM: 41.7
P10809_1004
41.7
P10809_1023
54.9
P10809_1042
62.7
P10809_1061
48.8
P10809_1081
52.7
P10809_1108
42.0
Non-classical monocyte nTPM: 58.4
Samples: 5
Max nTPM: 89.1
Min nTPM: 45.2
P10809_1005
45.2
P10809_1053
58.4
P10809_1072
89.1
P10809_1082
48.2
P10809_1109
51.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
135.2
Monaco sample
nTPM
Classical monocyte nTPM: 135.3
Samples: 4
Max nTPM: 139.2
Min nTPM: 133.4
RHH5313_R3680
139.2
RHH5221_R3593
133.4
RHH5250_R3622
133.7
RHH5279_R3651
134.7
Intermediate monocyte nTPM: 104.3
Samples: 4
Max nTPM: 114.3
Min nTPM: 86.0
RHH5314_R3681
86.0
RHH5222_R3594
104.9
RHH5251_R3623
111.8
RHH5280_R3652
114.3
Non-classical monocyte nTPM: 123.8
Samples: 4
Max nTPM: 140.9
Min nTPM: 109.4
RHH5315_R3682
109.4
RHH5223_R3595
121.7
RHH5252_R3624
123.1
RHH5281_R3653
140.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
60.1
Schmiedel sample id
TPM
Classical monocyte TPM: 47.7
Samples: 91
Max TPM: 65.1
Min TPM: 31.8
MONOCYTES_1
65.1
MONOCYTES_2
63.2
MONOCYTES_3
60.3
MONOCYTES_4
59.7
MONOCYTES_5
59.0
MONOCYTES_6
57.7
MONOCYTES_7
57.5
MONOCYTES_8
57.4
MONOCYTES_9
57.1
MONOCYTES_10
56.6
MONOCYTES_11
56.5
MONOCYTES_12
54.9
MONOCYTES_13
54.8
MONOCYTES_14
54.3
MONOCYTES_15
54.1
MONOCYTES_16
53.7
MONOCYTES_17
53.7
MONOCYTES_18
53.5
MONOCYTES_19
52.8
MONOCYTES_20
52.6
MONOCYTES_21
52.6
MONOCYTES_22
52.4
MONOCYTES_23
52.1
MONOCYTES_24
51.9
MONOCYTES_25
51.7
MONOCYTES_26
51.3
MONOCYTES_27
51.3
MONOCYTES_28
51.0
MONOCYTES_29
50.8
MONOCYTES_30
50.6
MONOCYTES_31
50.3
MONOCYTES_32
50.0
MONOCYTES_33
49.5
MONOCYTES_34
49.1
MONOCYTES_35
49.0
MONOCYTES_36
48.9
MONOCYTES_37
48.9
MONOCYTES_38
48.7
MONOCYTES_39
48.7
MONOCYTES_40
48.6
MONOCYTES_41
48.5
MONOCYTES_42
48.4
MONOCYTES_43
48.4
MONOCYTES_44
48.0
MONOCYTES_45
47.8
MONOCYTES_46
46.9
MONOCYTES_47
46.9
MONOCYTES_48
46.8
MONOCYTES_49
46.8
MONOCYTES_50
46.6
MONOCYTES_51
46.4
MONOCYTES_52
46.3
MONOCYTES_53
46.3
MONOCYTES_54
45.9
MONOCYTES_55
45.9
MONOCYTES_56
45.8
MONOCYTES_57
45.6
MONOCYTES_58
45.6
MONOCYTES_59
45.5
MONOCYTES_60
45.4
MONOCYTES_61
45.2
MONOCYTES_62
45.0
MONOCYTES_63
44.4
MONOCYTES_64
44.4
MONOCYTES_65
43.9
MONOCYTES_66
43.1
MONOCYTES_67
43.1
MONOCYTES_68
42.9
MONOCYTES_69
42.8
MONOCYTES_70
42.7
MONOCYTES_71
42.5
MONOCYTES_72
42.3
MONOCYTES_73
42.2
MONOCYTES_74
42.2
MONOCYTES_75
42.1
MONOCYTES_76
42.1
MONOCYTES_77
41.5
MONOCYTES_78
41.0
MONOCYTES_79
40.9
MONOCYTES_80
40.9
MONOCYTES_81
40.7
MONOCYTES_82
40.6
MONOCYTES_83
40.3
MONOCYTES_84
39.1
MONOCYTES_85
38.3
MONOCYTES_86
38.1
MONOCYTES_87
37.9
MONOCYTES_88
35.4
MONOCYTES_89
35.4
MONOCYTES_90
35.2
MONOCYTES_91
31.8
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Non-classical monocyte TPM: 60.1
Samples: 90
Max TPM: 94.8
Min TPM: 35.1
M2_1
94.8
M2_2
92.5
M2_3
82.7
M2_4
80.2
M2_5
79.6
M2_6
78.7
M2_7
76.7
M2_8
76.3
M2_9
76.1
M2_10
73.3
M2_11
72.5
M2_12
71.5
M2_13
71.3
M2_14
70.0
M2_15
69.5
M2_16
69.2
M2_17
68.8
M2_18
68.8
M2_19
68.1
M2_20
67.6
M2_21
66.4
M2_22
66.3
M2_23
66.0
M2_24
65.6
M2_25
65.3
M2_26
64.8
M2_27
64.7
M2_28
63.7
M2_29
63.3
M2_30
62.7
M2_31
62.6
M2_32
61.9
M2_33
61.8
M2_34
60.9
M2_35
60.6
M2_36
60.5
M2_37
60.4
M2_38
60.2
M2_39
60.2
M2_40
60.1
M2_41
59.4
M2_42
59.2
M2_43
58.9
M2_44
58.7
M2_45
58.4
M2_46
57.6
M2_47
57.6
M2_48
57.2
M2_49
56.8
M2_50
56.7
M2_51
56.6
M2_52
56.3
M2_53
56.2
M2_54
56.1
M2_55
55.8
M2_56
55.5
M2_57
55.3
M2_58
54.3
M2_59
54.3
M2_60
54.2
M2_61
53.5
M2_62
53.5
M2_63
53.5
M2_64
53.4
M2_65
53.4
M2_66
53.4
M2_67
53.1
M2_68
53.1
M2_69
52.1
M2_70
52.0
M2_71
52.0
M2_72
51.7
M2_73
51.5
M2_74
51.2
M2_75
51.1
M2_76
51.1
M2_77
51.0
M2_78
50.5
M2_79
50.5
M2_80
50.1
M2_81
49.6
M2_82
49.3
M2_83
49.3
M2_84
49.2
M2_85
49.0
M2_86
48.5
M2_87
45.9
M2_88
45.4
M2_89
43.3
M2_90
35.1
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