A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.3
nTPM
Monaco:
129.8
nTPM
Schmiedel:
168.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.3
HPA sample
nTPM
NK-cell nTPM: 13.3
Samples: 6
Max nTPM: 18.1
Min nTPM: 8.2
P10809_1013
13.4
P10809_1033
13.3
P10809_1052
11.1
P10809_1071
8.2
P10809_1093
18.1
P10809_1103
15.5
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
129.8
Monaco sample
nTPM
NK-cell nTPM: 129.8
Samples: 4
Max nTPM: 163.1
Min nTPM: 110.1
RHH5316_R3683
117.2
RHH5224_R3596
128.9
RHH5253_R3625
163.1
RHH5282_R3654
110.1
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
168.4
Schmiedel sample id
TPM
NK-cell TPM: 168.4
Samples: 90
Max TPM: 219.5
Min TPM: 125.2
NK_1
219.5
NK_2
209.1
NK_3
207.7
NK_4
205.4
NK_5
202.9
NK_6
200.8
NK_7
199.3
NK_8
196.8
NK_9
195.5
NK_10
194.3
NK_11
194.2
NK_12
193.9
NK_13
193.3
NK_14
192.7
NK_15
191.5
NK_16
190.3
NK_17
186.8
NK_18
186.5
NK_19
186.0
NK_20
185.1
NK_21
182.8
NK_22
182.1
NK_23
181.7
NK_24
180.2
NK_25
179.5
NK_26
178.8
NK_27
178.2
NK_28
178.1
NK_29
177.5
NK_30
176.8
NK_31
176.5
NK_32
175.9
NK_33
174.8
NK_34
174.4
NK_35
173.2
NK_36
173.0
NK_37
172.3
NK_38
170.2
NK_39
169.7
NK_40
169.4
NK_41
168.2
NK_42
168.1
NK_43
168.0
NK_44
167.9
NK_45
167.4
NK_46
167.4
NK_47
166.3
NK_48
165.9
NK_49
165.1
NK_50
164.7
NK_51
164.6
NK_52
164.2
NK_53
163.4
NK_54
162.9
NK_55
162.4
NK_56
162.2
NK_57
161.1
NK_58
160.4
NK_59
159.9
NK_60
159.2
NK_61
158.8
NK_62
158.6
NK_63
157.6
NK_64
157.2
NK_65
156.7
NK_66
156.2
NK_67
156.1
NK_68
154.3
NK_69
154.3
NK_70
154.1
NK_71
153.5
NK_72
151.1
NK_73
149.7
NK_74
149.0
NK_75
147.6
NK_76
146.5
NK_77
146.3
NK_78
145.9
NK_79
145.7
NK_80
145.4
NK_81
144.5
NK_82
143.5
NK_83
143.0
NK_84
140.1
NK_85
137.1
NK_86
133.2
NK_87
133.1
NK_88
132.0
NK_89
129.6
NK_90
125.2
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