A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.1
nTPM
Monaco:
12.2
nTPM
Schmiedel:
43.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.1
HPA sample
nTPM
NK-cell nTPM: 2.1
Samples: 6
Max nTPM: 4.5
Min nTPM: 0.0
P10809_1013
4.5
P10809_1033
2.3
P10809_1052
0.5
P10809_1071
3.2
P10809_1093
0.0
P10809_1103
2.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
12.2
Monaco sample
nTPM
NK-cell nTPM: 12.2
Samples: 4
Max nTPM: 16.9
Min nTPM: 8.6
RHH5316_R3683
16.9
RHH5224_R3596
8.6
RHH5253_R3625
11.8
RHH5282_R3654
11.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.3
Schmiedel sample id
TPM
NK-cell TPM: 43.2
Samples: 90
Max TPM: 61.0
Min TPM: 24.7
NK_1
61.0
NK_2
60.5
NK_3
58.9
NK_4
57.7
NK_5
57.0
NK_6
55.1
NK_7
54.3
NK_8
53.9
NK_9
53.0
NK_10
52.2
NK_11
51.8
NK_12
51.6
NK_13
51.3
NK_14
50.8
NK_15
50.5
NK_16
50.3
NK_17
50.1
NK_18
50.1
NK_19
50.0
NK_20
49.9
NK_21
49.8
NK_22
49.7
NK_23
49.6
NK_24
49.3
NK_25
49.3
NK_26
49.0
NK_27
48.5
NK_28
48.3
NK_29
47.7
NK_30
47.5
NK_31
46.9
NK_32
46.8
NK_33
46.8
NK_34
46.8
NK_35
45.8
NK_36
45.8
NK_37
45.4
NK_38
45.2
NK_39
45.2
NK_40
44.4
NK_41
44.4
NK_42
44.2
NK_43
43.8
NK_44
43.8
NK_45
43.3
NK_46
43.1
NK_47
42.9
NK_48
42.5
NK_49
42.4
NK_50
41.9
NK_51
41.9
NK_52
41.2
NK_53
40.9
NK_54
40.3
NK_55
40.1
NK_56
39.8
NK_57
39.7
NK_58
39.7
NK_59
39.5
NK_60
39.5
NK_61
39.3
NK_62
38.9
NK_63
38.5
NK_64
38.5
NK_65
38.4
NK_66
38.3
NK_67
38.3
NK_68
38.2
NK_69
37.9
NK_70
36.7
NK_71
36.5
NK_72
36.4
NK_73
36.4
NK_74
36.1
NK_75
36.0
NK_76
36.0
NK_77
35.3
NK_78
35.2
NK_79
34.3
NK_80
33.8
NK_81
33.7
NK_82
33.4
NK_83
31.9
NK_84
31.4
NK_85
31.2
NK_86
30.8
NK_87
28.9
NK_88
28.6
NK_89
26.0
NK_90
24.7
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