A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.2
nTPM
Monaco:
67.2
nTPM
Schmiedel:
101.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.2
HPA sample
nTPM
Classical monocyte nTPM: 6.1
Samples: 6
Max nTPM: 8.3
Min nTPM: 4.7
P10809_1003
4.9
P10809_1020
8.2
P10809_1039
8.3
P10809_1058
4.7
P10809_1080
5.6
P10809_1107
5.2
Intermediate monocyte nTPM: 17.8
Samples: 6
Max nTPM: 34.9
Min nTPM: 8.2
P10809_1004
18.5
P10809_1023
34.9
P10809_1042
16.5
P10809_1061
8.2
P10809_1081
13.0
P10809_1108
15.8
Non-classical monocyte nTPM: 22.2
Samples: 5
Max nTPM: 45.9
Min nTPM: 12.5
P10809_1005
18.7
P10809_1053
16.7
P10809_1072
45.9
P10809_1082
12.5
P10809_1109
17.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.2
Monaco sample
nTPM
Classical monocyte nTPM: 66.4
Samples: 4
Max nTPM: 81.2
Min nTPM: 53.6
RHH5313_R3680
62.8
RHH5221_R3593
81.2
RHH5250_R3622
53.6
RHH5279_R3651
68.0
Intermediate monocyte nTPM: 60.4
Samples: 4
Max nTPM: 73.7
Min nTPM: 37.7
RHH5314_R3681
59.0
RHH5222_R3594
71.1
RHH5251_R3623
73.7
RHH5280_R3652
37.7
Non-classical monocyte nTPM: 67.2
Samples: 4
Max nTPM: 91.0
Min nTPM: 50.2
RHH5315_R3682
73.0
RHH5223_R3595
50.2
RHH5252_R3624
91.0
RHH5281_R3653
54.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.2
Schmiedel sample id
TPM
Classical monocyte TPM: 45.5
Samples: 91
Max TPM: 59.6
Min TPM: 34.2
MONOCYTES_1
59.6
MONOCYTES_2
54.9
MONOCYTES_3
54.7
MONOCYTES_4
54.7
MONOCYTES_5
53.4
MONOCYTES_6
53.1
MONOCYTES_7
52.8
MONOCYTES_8
52.6
MONOCYTES_9
52.3
MONOCYTES_10
52.1
MONOCYTES_11
51.9
MONOCYTES_12
51.7
MONOCYTES_13
51.2
MONOCYTES_14
50.9
MONOCYTES_15
50.7
MONOCYTES_16
49.8
MONOCYTES_17
49.6
MONOCYTES_18
49.5
MONOCYTES_19
49.4
MONOCYTES_20
49.3
MONOCYTES_21
49.0
MONOCYTES_22
48.9
MONOCYTES_23
48.5
MONOCYTES_24
48.4
MONOCYTES_25
48.3
MONOCYTES_26
47.8
MONOCYTES_27
47.8
MONOCYTES_28
47.7
MONOCYTES_29
47.7
MONOCYTES_30
47.3
MONOCYTES_31
47.3
MONOCYTES_32
47.3
MONOCYTES_33
47.1
MONOCYTES_34
47.1
MONOCYTES_35
47.0
MONOCYTES_36
46.9
MONOCYTES_37
46.8
MONOCYTES_38
46.7
MONOCYTES_39
46.7
MONOCYTES_40
46.5
MONOCYTES_41
46.4
MONOCYTES_42
46.2
MONOCYTES_43
46.1
MONOCYTES_44
45.4
MONOCYTES_45
45.3
MONOCYTES_46
45.2
MONOCYTES_47
45.1
MONOCYTES_48
45.1
MONOCYTES_49
45.0
MONOCYTES_50
44.8
MONOCYTES_51
44.7
MONOCYTES_52
44.6
MONOCYTES_53
44.4
MONOCYTES_54
44.4
MONOCYTES_55
44.2
MONOCYTES_56
43.9
MONOCYTES_57
43.8
MONOCYTES_58
43.8
MONOCYTES_59
43.5
MONOCYTES_60
43.3
MONOCYTES_61
43.0
MONOCYTES_62
42.9
MONOCYTES_63
42.8
MONOCYTES_64
42.7
MONOCYTES_65
42.5
MONOCYTES_66
42.4
MONOCYTES_67
42.2
MONOCYTES_68
42.2
MONOCYTES_69
42.1
MONOCYTES_70
41.9
MONOCYTES_71
41.8
MONOCYTES_72
41.8
MONOCYTES_73
41.4
MONOCYTES_74
41.2
MONOCYTES_75
41.2
MONOCYTES_76
41.1
MONOCYTES_77
41.1
MONOCYTES_78
40.1
MONOCYTES_79
39.7
MONOCYTES_80
39.6
MONOCYTES_81
39.6
MONOCYTES_82
39.5
MONOCYTES_83
39.4
MONOCYTES_84
39.3
MONOCYTES_85
38.6
MONOCYTES_86
37.7
MONOCYTES_87
37.5
MONOCYTES_88
36.9
MONOCYTES_89
36.1
MONOCYTES_90
34.8
MONOCYTES_91
34.2
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Non-classical monocyte TPM: 101.2
Samples: 90
Max TPM: 119.0
Min TPM: 83.3
M2_1
119.0
M2_2
118.9
M2_3
117.1
M2_4
116.9
M2_5
116.7
M2_6
115.1
M2_7
114.8
M2_8
114.5
M2_9
112.0
M2_10
110.3
M2_11
110.2
M2_12
109.9
M2_13
108.9
M2_14
108.7
M2_15
108.6
M2_16
108.4
M2_17
107.8
M2_18
107.7
M2_19
107.6
M2_20
107.2
M2_21
106.4
M2_22
106.4
M2_23
106.2
M2_24
105.8
M2_25
105.1
M2_26
105.1
M2_27
104.7
M2_28
104.6
M2_29
104.6
M2_30
104.5
M2_31
104.4
M2_32
104.2
M2_33
104.0
M2_34
103.9
M2_35
103.7
M2_36
103.7
M2_37
103.6
M2_38
103.4
M2_39
102.9
M2_40
102.8
M2_41
102.8
M2_42
102.6
M2_43
102.5
M2_44
101.7
M2_45
101.7
M2_46
101.6
M2_47
101.5
M2_48
101.4
M2_49
101.2
M2_50
100.6
M2_51
100.3
M2_52
100.3
M2_53
100.2
M2_54
99.8
M2_55
99.7
M2_56
99.6
M2_57
99.6
M2_58
98.9
M2_59
98.8
M2_60
98.7
M2_61
98.4
M2_62
97.7
M2_63
97.4
M2_64
97.3
M2_65
97.2
M2_66
96.7
M2_67
96.5
M2_68
95.9
M2_69
95.8
M2_70
95.5
M2_71
95.4
M2_72
93.8
M2_73
93.1
M2_74
92.8
M2_75
92.3
M2_76
92.2
M2_77
91.8
M2_78
91.5
M2_79
91.1
M2_80
90.9
M2_81
90.7
M2_82
89.8
M2_83
88.8
M2_84
88.5
M2_85
87.3
M2_86
86.1
M2_87
86.0
M2_88
85.7
M2_89
84.7
M2_90
83.3
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