A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.5
nTPM
Monaco:
28.3
nTPM
Schmiedel:
49.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.5
HPA sample
nTPM
Classical monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.7
P10809_1003
2.4
P10809_1020
1.2
P10809_1039
2.0
P10809_1058
0.9
P10809_1080
0.7
P10809_1107
1.4
Intermediate monocyte nTPM: 1.1
Samples: 6
Max nTPM: 2.8
Min nTPM: 0.0
P10809_1004
2.8
P10809_1023
0.9
P10809_1042
0.0
P10809_1061
0.0
P10809_1081
0.7
P10809_1108
2.1
Non-classical monocyte nTPM: 1.4
Samples: 5
Max nTPM: 3.7
Min nTPM: 0.0
P10809_1005
3.7
P10809_1053
0.8
P10809_1072
0.0
P10809_1082
1.0
P10809_1109
1.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.3
Monaco sample
nTPM
Classical monocyte nTPM: 22.2
Samples: 4
Max nTPM: 30.3
Min nTPM: 14.6
RHH5313_R3680
14.6
RHH5221_R3593
30.3
RHH5250_R3622
22.1
RHH5279_R3651
21.6
Intermediate monocyte nTPM: 25.7
Samples: 4
Max nTPM: 32.4
Min nTPM: 15.4
RHH5314_R3681
25.3
RHH5222_R3594
32.4
RHH5251_R3623
29.8
RHH5280_R3652
15.4
Non-classical monocyte nTPM: 28.3
Samples: 4
Max nTPM: 37.2
Min nTPM: 16.2
RHH5315_R3682
34.2
RHH5223_R3595
25.6
RHH5252_R3624
37.2
RHH5281_R3653
16.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.7
Schmiedel sample id
TPM
Classical monocyte TPM: 49.7
Samples: 91
Max TPM: 73.8
Min TPM: 34.6
MONOCYTES_1
73.8
MONOCYTES_2
69.0
MONOCYTES_3
65.5
MONOCYTES_4
64.5
MONOCYTES_5
61.9
MONOCYTES_6
61.3
MONOCYTES_7
60.1
MONOCYTES_8
59.2
MONOCYTES_9
58.8
MONOCYTES_10
57.1
MONOCYTES_11
54.7
MONOCYTES_12
54.5
MONOCYTES_13
54.5
MONOCYTES_14
54.3
MONOCYTES_15
54.2
MONOCYTES_16
54.2
MONOCYTES_17
53.9
MONOCYTES_18
53.6
MONOCYTES_19
53.6
MONOCYTES_20
53.5
MONOCYTES_21
53.1
MONOCYTES_22
53.0
MONOCYTES_23
52.9
MONOCYTES_24
52.8
MONOCYTES_25
52.8
MONOCYTES_26
52.6
MONOCYTES_27
52.6
MONOCYTES_28
52.5
MONOCYTES_29
52.4
MONOCYTES_30
52.2
MONOCYTES_31
51.9
MONOCYTES_32
51.8
MONOCYTES_33
51.4
MONOCYTES_34
50.5
MONOCYTES_35
50.5
MONOCYTES_36
50.5
MONOCYTES_37
50.5
MONOCYTES_38
50.1
MONOCYTES_39
49.5
MONOCYTES_40
49.3
MONOCYTES_41
49.2
MONOCYTES_42
49.1
MONOCYTES_43
49.0
MONOCYTES_44
48.7
MONOCYTES_45
48.7
MONOCYTES_46
48.6
MONOCYTES_47
48.5
MONOCYTES_48
48.4
MONOCYTES_49
48.4
MONOCYTES_50
48.2
MONOCYTES_51
48.1
MONOCYTES_52
48.0
MONOCYTES_53
48.0
MONOCYTES_54
48.0
MONOCYTES_55
47.9
MONOCYTES_56
47.6
MONOCYTES_57
47.2
MONOCYTES_58
47.0
MONOCYTES_59
47.0
MONOCYTES_60
46.9
MONOCYTES_61
46.8
MONOCYTES_62
46.6
MONOCYTES_63
46.5
MONOCYTES_64
46.4
MONOCYTES_65
46.4
MONOCYTES_66
46.4
MONOCYTES_67
46.3
MONOCYTES_68
46.1
MONOCYTES_69
46.1
MONOCYTES_70
45.7
MONOCYTES_71
45.5
MONOCYTES_72
45.0
MONOCYTES_73
44.7
MONOCYTES_74
44.7
MONOCYTES_75
44.1
MONOCYTES_76
44.1
MONOCYTES_77
43.9
MONOCYTES_78
43.8
MONOCYTES_79
43.7
MONOCYTES_80
43.3
MONOCYTES_81
43.0
MONOCYTES_82
42.7
MONOCYTES_83
42.1
MONOCYTES_84
41.7
MONOCYTES_85
41.5
MONOCYTES_86
41.2
MONOCYTES_87
41.0
MONOCYTES_88
39.8
MONOCYTES_89
39.0
MONOCYTES_90
38.4
MONOCYTES_91
34.6
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Non-classical monocyte TPM: 48.3
Samples: 90
Max TPM: 62.5
Min TPM: 34.2
M2_1
62.5
M2_2
59.8
M2_3
59.0
M2_4
57.5
M2_5
56.0
M2_6
56.0
M2_7
55.6
M2_8
55.6
M2_9
54.7
M2_10
54.5
M2_11
53.8
M2_12
53.7
M2_13
53.7
M2_14
53.6
M2_15
53.4
M2_16
52.8
M2_17
52.7
M2_18
52.6
M2_19
52.5
M2_20
52.2
M2_21
52.1
M2_22
52.0
M2_23
51.9
M2_24
51.8
M2_25
51.5
M2_26
50.7
M2_27
50.4
M2_28
50.3
M2_29
50.2
M2_30
49.9
M2_31
49.7
M2_32
49.5
M2_33
49.4
M2_34
49.3
M2_35
49.2
M2_36
49.1
M2_37
49.0
M2_38
48.8
M2_39
48.6
M2_40
48.4
M2_41
48.2
M2_42
48.2
M2_43
48.1
M2_44
47.9
M2_45
47.8
M2_46
47.3
M2_47
47.1
M2_48
47.1
M2_49
47.0
M2_50
47.0
M2_51
46.9
M2_52
46.8
M2_53
46.8
M2_54
46.7
M2_55
46.6
M2_56
46.5
M2_57
46.5
M2_58
46.2
M2_59
46.1
M2_60
46.1
M2_61
46.0
M2_62
45.9
M2_63
45.7
M2_64
45.6
M2_65
45.6
M2_66
45.6
M2_67
45.3
M2_68
45.2
M2_69
45.1
M2_70
45.0
M2_71
45.0
M2_72
44.9
M2_73
44.8
M2_74
44.4
M2_75
44.0
M2_76
43.9
M2_77
43.8
M2_78
43.7
M2_79
43.3
M2_80
43.2
M2_81
42.9
M2_82
42.9
M2_83
42.8
M2_84
42.8
M2_85
42.8
M2_86
40.3
M2_87
39.0
M2_88
38.9
M2_89
38.7
M2_90
34.2
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