A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.7
nTPM
Monaco:
25.8
nTPM
Schmiedel:
26.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.7
HPA sample
nTPM
Classical monocyte nTPM: 1.7
Samples: 6
Max nTPM: 4.0
Min nTPM: 0.7
P10809_1003
4.0
P10809_1020
1.3
P10809_1039
0.7
P10809_1058
1.6
P10809_1080
1.3
P10809_1107
1.1
Intermediate monocyte nTPM: 2.5
Samples: 6
Max nTPM: 6.8
Min nTPM: 0.7
P10809_1004
6.8
P10809_1023
0.7
P10809_1042
2.4
P10809_1061
2.6
P10809_1081
1.1
P10809_1108
1.4
Non-classical monocyte nTPM: 2.8
Samples: 5
Max nTPM: 6.5
Min nTPM: 1.2
P10809_1005
6.5
P10809_1053
1.8
P10809_1072
1.2
P10809_1082
1.8
P10809_1109
2.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.8
Monaco sample
nTPM
Classical monocyte nTPM: 13.9
Samples: 4
Max nTPM: 17.5
Min nTPM: 11.6
RHH5313_R3680
14.0
RHH5221_R3593
17.5
RHH5250_R3622
11.6
RHH5279_R3651
12.5
Intermediate monocyte nTPM: 21.3
Samples: 4
Max nTPM: 27.0
Min nTPM: 16.6
RHH5314_R3681
16.6
RHH5222_R3594
27.0
RHH5251_R3623
21.0
RHH5280_R3652
20.6
Non-classical monocyte nTPM: 25.8
Samples: 4
Max nTPM: 31.5
Min nTPM: 19.3
RHH5315_R3682
22.8
RHH5223_R3595
29.8
RHH5252_R3624
31.5
RHH5281_R3653
19.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.9
Schmiedel sample id
TPM
Classical monocyte TPM: 16.0
Samples: 91
Max TPM: 27.5
Min TPM: 8.5
MONOCYTES_1
27.5
MONOCYTES_2
26.7
MONOCYTES_3
26.6
MONOCYTES_4
26.1
MONOCYTES_5
24.0
MONOCYTES_6
23.7
MONOCYTES_7
22.9
MONOCYTES_8
21.5
MONOCYTES_9
21.5
MONOCYTES_10
21.4
MONOCYTES_11
21.2
MONOCYTES_12
20.3
MONOCYTES_13
19.9
MONOCYTES_14
19.6
MONOCYTES_15
19.6
MONOCYTES_16
19.5
MONOCYTES_17
19.1
MONOCYTES_18
19.0
MONOCYTES_19
18.9
MONOCYTES_20
18.7
MONOCYTES_21
18.7
MONOCYTES_22
18.5
MONOCYTES_23
18.5
MONOCYTES_24
18.3
MONOCYTES_25
18.3
MONOCYTES_26
18.2
MONOCYTES_27
18.2
MONOCYTES_28
18.1
MONOCYTES_29
17.8
MONOCYTES_30
17.8
MONOCYTES_31
17.6
MONOCYTES_32
17.6
MONOCYTES_33
17.4
MONOCYTES_34
17.4
MONOCYTES_35
17.2
MONOCYTES_36
17.1
MONOCYTES_37
17.0
MONOCYTES_38
17.0
MONOCYTES_39
16.7
MONOCYTES_40
16.6
MONOCYTES_41
16.6
MONOCYTES_42
16.2
MONOCYTES_43
16.2
MONOCYTES_44
15.8
MONOCYTES_45
15.7
MONOCYTES_46
15.5
MONOCYTES_47
15.5
MONOCYTES_48
15.4
MONOCYTES_49
15.3
MONOCYTES_50
15.3
MONOCYTES_51
15.2
MONOCYTES_52
15.1
MONOCYTES_53
14.9
MONOCYTES_54
14.9
MONOCYTES_55
14.8
MONOCYTES_56
14.7
MONOCYTES_57
14.6
MONOCYTES_58
14.4
MONOCYTES_59
14.2
MONOCYTES_60
14.1
MONOCYTES_61
14.1
MONOCYTES_62
13.8
MONOCYTES_63
13.6
MONOCYTES_64
13.2
MONOCYTES_65
13.1
MONOCYTES_66
13.1
MONOCYTES_67
12.8
MONOCYTES_68
12.8
MONOCYTES_69
12.8
MONOCYTES_70
12.7
MONOCYTES_71
12.5
MONOCYTES_72
12.3
MONOCYTES_73
12.3
MONOCYTES_74
11.8
MONOCYTES_75
11.8
MONOCYTES_76
11.7
MONOCYTES_77
11.7
MONOCYTES_78
11.7
MONOCYTES_79
11.6
MONOCYTES_80
11.5
MONOCYTES_81
11.4
MONOCYTES_82
10.9
MONOCYTES_83
10.6
MONOCYTES_84
10.4
MONOCYTES_85
10.2
MONOCYTES_86
9.9
MONOCYTES_87
9.8
MONOCYTES_88
9.3
MONOCYTES_89
9.1
MONOCYTES_90
9.1
MONOCYTES_91
8.5
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Non-classical monocyte TPM: 26.9
Samples: 90
Max TPM: 51.3
Min TPM: 10.3
M2_1
51.3
M2_2
44.7
M2_3
42.4
M2_4
38.4
M2_5
38.1
M2_6
37.6
M2_7
37.6
M2_8
36.7
M2_9
36.2
M2_10
35.2
M2_11
34.9
M2_12
34.1
M2_13
34.0
M2_14
33.9
M2_15
33.6
M2_16
33.4
M2_17
33.4
M2_18
33.2
M2_19
32.6
M2_20
32.6
M2_21
32.4
M2_22
32.3
M2_23
32.2
M2_24
32.1
M2_25
31.9
M2_26
31.8
M2_27
31.5
M2_28
31.5
M2_29
31.4
M2_30
31.3
M2_31
31.2
M2_32
31.0
M2_33
30.7
M2_34
29.9
M2_35
29.3
M2_36
29.0
M2_37
29.0
M2_38
28.8
M2_39
28.4
M2_40
28.1
M2_41
27.7
M2_42
27.6
M2_43
27.4
M2_44
27.3
M2_45
27.1
M2_46
26.8
M2_47
26.7
M2_48
26.6
M2_49
26.2
M2_50
26.0
M2_51
25.9
M2_52
25.8
M2_53
25.7
M2_54
25.7
M2_55
25.6
M2_56
25.4
M2_57
25.3
M2_58
24.8
M2_59
24.8
M2_60
24.5
M2_61
24.4
M2_62
23.8
M2_63
23.6
M2_64
23.4
M2_65
23.0
M2_66
22.8
M2_67
22.8
M2_68
22.2
M2_69
21.8
M2_70
21.1
M2_71
20.0
M2_72
19.2
M2_73
19.0
M2_74
19.0
M2_75
17.7
M2_76
17.5
M2_77
17.4
M2_78
17.4
M2_79
17.0
M2_80
16.5
M2_81
16.3
M2_82
16.1
M2_83
15.6
M2_84
15.2
M2_85
15.0
M2_86
14.7
M2_87
14.6
M2_88
13.9
M2_89
12.0
M2_90
10.3
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