A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.2
nTPM
Monaco:
48.3
nTPM
Schmiedel:
23.5
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.2
HPA sample
nTPM
Classical monocyte nTPM: 19.8
Samples: 6
Max nTPM: 43.4
Min nTPM: 6.7
P10809_1003
21.7
P10809_1020
18.7
P10809_1039
43.4
P10809_1058
7.2
P10809_1080
6.7
P10809_1107
20.8
Intermediate monocyte nTPM: 17.2
Samples: 6
Max nTPM: 30.1
Min nTPM: 4.2
P10809_1004
30.1
P10809_1023
17.4
P10809_1042
14.6
P10809_1061
7.0
P10809_1081
4.2
P10809_1108
30.1
Non-classical monocyte nTPM: 22.2
Samples: 5
Max nTPM: 48.2
Min nTPM: 6.8
P10809_1005
48.2
P10809_1053
9.7
P10809_1072
6.8
P10809_1082
8.4
P10809_1109
37.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.3
Monaco sample
nTPM
Classical monocyte nTPM: 41.0
Samples: 4
Max nTPM: 89.6
Min nTPM: 13.9
RHH5313_R3680
26.9
RHH5221_R3593
89.6
RHH5250_R3622
13.9
RHH5279_R3651
33.6
Intermediate monocyte nTPM: 43.3
Samples: 4
Max nTPM: 71.5
Min nTPM: 6.0
RHH5314_R3681
48.2
RHH5222_R3594
71.5
RHH5251_R3623
47.6
RHH5280_R3652
6.0
Non-classical monocyte nTPM: 48.3
Samples: 4
Max nTPM: 80.1
Min nTPM: 5.7
RHH5315_R3682
60.0
RHH5223_R3595
47.2
RHH5252_R3624
80.1
RHH5281_R3653
5.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
23.5
Schmiedel sample id
TPM
Classical monocyte TPM: 18.5
Samples: 91
Max TPM: 21.6
Min TPM: 14.3
MONOCYTES_1
21.6
MONOCYTES_2
21.2
MONOCYTES_3
21.1
MONOCYTES_4
21.1
MONOCYTES_5
21.0
MONOCYTES_6
20.9
MONOCYTES_7
20.9
MONOCYTES_8
20.8
MONOCYTES_9
20.7
MONOCYTES_10
20.6
MONOCYTES_11
20.5
MONOCYTES_12
20.4
MONOCYTES_13
20.4
MONOCYTES_14
20.3
MONOCYTES_15
20.2
MONOCYTES_16
20.2
MONOCYTES_17
20.2
MONOCYTES_18
19.9
MONOCYTES_19
19.8
MONOCYTES_20
19.8
MONOCYTES_21
19.8
MONOCYTES_22
19.7
MONOCYTES_23
19.6
MONOCYTES_24
19.6
MONOCYTES_25
19.5
MONOCYTES_26
19.4
MONOCYTES_27
19.4
MONOCYTES_28
19.4
MONOCYTES_29
19.3
MONOCYTES_30
19.3
MONOCYTES_31
19.3
MONOCYTES_32
19.3
MONOCYTES_33
19.3
MONOCYTES_34
19.2
MONOCYTES_35
19.2
MONOCYTES_36
19.2
MONOCYTES_37
19.1
MONOCYTES_38
19.0
MONOCYTES_39
18.9
MONOCYTES_40
18.9
MONOCYTES_41
18.9
MONOCYTES_42
18.8
MONOCYTES_43
18.7
MONOCYTES_44
18.7
MONOCYTES_45
18.6
MONOCYTES_46
18.5
MONOCYTES_47
18.5
MONOCYTES_48
18.3
MONOCYTES_49
18.3
MONOCYTES_50
18.2
MONOCYTES_51
18.2
MONOCYTES_52
18.1
MONOCYTES_53
18.1
MONOCYTES_54
18.1
MONOCYTES_55
18.0
MONOCYTES_56
18.0
MONOCYTES_57
18.0
MONOCYTES_58
17.9
MONOCYTES_59
17.8
MONOCYTES_60
17.8
MONOCYTES_61
17.8
MONOCYTES_62
17.8
MONOCYTES_63
17.8
MONOCYTES_64
17.8
MONOCYTES_65
17.4
MONOCYTES_66
17.3
MONOCYTES_67
17.3
MONOCYTES_68
17.3
MONOCYTES_69
17.2
MONOCYTES_70
17.2
MONOCYTES_71
17.2
MONOCYTES_72
17.2
MONOCYTES_73
17.1
MONOCYTES_74
17.1
MONOCYTES_75
16.8
MONOCYTES_76
16.7
MONOCYTES_77
16.7
MONOCYTES_78
16.7
MONOCYTES_79
16.7
MONOCYTES_80
16.6
MONOCYTES_81
16.5
MONOCYTES_82
16.4
MONOCYTES_83
16.4
MONOCYTES_84
16.4
MONOCYTES_85
16.2
MONOCYTES_86
16.0
MONOCYTES_87
15.8
MONOCYTES_88
15.6
MONOCYTES_89
15.5
MONOCYTES_90
15.5
MONOCYTES_91
14.3
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Non-classical monocyte TPM: 23.5
Samples: 90
Max TPM: 27.0
Min TPM: 19.1
M2_1
27.0
M2_2
26.7
M2_3
26.7
M2_4
26.4
M2_5
26.3
M2_6
26.2
M2_7
26.0
M2_8
26.0
M2_9
25.8
M2_10
25.7
M2_11
25.7
M2_12
25.7
M2_13
25.6
M2_14
25.5
M2_15
25.5
M2_16
25.5
M2_17
25.4
M2_18
25.3
M2_19
25.3
M2_20
25.3
M2_21
25.1
M2_22
25.1
M2_23
25.1
M2_24
25.0
M2_25
24.9
M2_26
24.9
M2_27
24.9
M2_28
24.8
M2_29
24.8
M2_30
24.8
M2_31
24.7
M2_32
24.7
M2_33
24.6
M2_34
24.5
M2_35
24.4
M2_36
24.4
M2_37
24.2
M2_38
24.2
M2_39
24.1
M2_40
24.0
M2_41
23.9
M2_42
23.9
M2_43
23.9
M2_44
23.8
M2_45
23.8
M2_46
23.7
M2_47
23.6
M2_48
23.5
M2_49
23.4
M2_50
23.4
M2_51
23.1
M2_52
23.0
M2_53
22.9
M2_54
22.9
M2_55
22.9
M2_56
22.9
M2_57
22.7
M2_58
22.7
M2_59
22.5
M2_60
22.5
M2_61
22.5
M2_62
22.5
M2_63
22.5
M2_64
22.3
M2_65
22.3
M2_66
22.2
M2_67
22.2
M2_68
22.1
M2_69
22.1
M2_70
22.1
M2_71
22.0
M2_72
21.9
M2_73
21.9
M2_74
21.7
M2_75
21.4
M2_76
21.4
M2_77
21.3
M2_78
21.1
M2_79
21.1
M2_80
21.0
M2_81
20.9
M2_82
20.9
M2_83
20.9
M2_84
20.8
M2_85
20.7
M2_86
20.7
M2_87
20.3
M2_88
19.9
M2_89
19.7
M2_90
19.1
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