A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.6
nTPM
Monaco:
42.3
nTPM
Schmiedel:
49.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.6
HPA sample
nTPM
Classical monocyte nTPM: 9.6
Samples: 6
Max nTPM: 11.9
Min nTPM: 7.1
P10809_1003
11.9
P10809_1020
11.6
P10809_1039
9.3
P10809_1058
9.0
P10809_1080
8.5
P10809_1107
7.1
Intermediate monocyte nTPM: 8.0
Samples: 6
Max nTPM: 14.9
Min nTPM: 3.7
P10809_1004
6.5
P10809_1023
5.0
P10809_1042
8.2
P10809_1061
14.9
P10809_1081
9.7
P10809_1108
3.7
Non-classical monocyte nTPM: 3.2
Samples: 5
Max nTPM: 5.4
Min nTPM: 1.0
P10809_1005
5.4
P10809_1053
4.7
P10809_1072
2.8
P10809_1082
2.1
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.3
Monaco sample
nTPM
Classical monocyte nTPM: 42.4
Samples: 4
Max nTPM: 57.4
Min nTPM: 31.6
RHH5313_R3680
46.5
RHH5221_R3593
31.6
RHH5250_R3622
57.4
RHH5279_R3651
34.0
Intermediate monocyte nTPM: 26.6
Samples: 4
Max nTPM: 43.0
Min nTPM: 17.8
RHH5314_R3681
27.5
RHH5222_R3594
43.0
RHH5251_R3623
18.1
RHH5280_R3652
17.8
Non-classical monocyte nTPM: 14.2
Samples: 4
Max nTPM: 27.3
Min nTPM: 8.2
RHH5315_R3682
8.2
RHH5223_R3595
27.3
RHH5252_R3624
8.6
RHH5281_R3653
12.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
49.2
Schmiedel sample id
TPM
Classical monocyte TPM: 49.2
Samples: 91
Max TPM: 73.0
Min TPM: 33.6
MONOCYTES_1
73.0
MONOCYTES_2
68.0
MONOCYTES_3
65.7
MONOCYTES_4
65.7
MONOCYTES_5
64.4
MONOCYTES_6
63.5
MONOCYTES_7
62.8
MONOCYTES_8
62.5
MONOCYTES_9
61.6
MONOCYTES_10
61.6
MONOCYTES_11
60.9
MONOCYTES_12
60.8
MONOCYTES_13
59.7
MONOCYTES_14
58.8
MONOCYTES_15
58.2
MONOCYTES_16
56.8
MONOCYTES_17
56.5
MONOCYTES_18
55.8
MONOCYTES_19
55.4
MONOCYTES_20
55.3
MONOCYTES_21
55.1
MONOCYTES_22
54.5
MONOCYTES_23
54.2
MONOCYTES_24
54.0
MONOCYTES_25
53.2
MONOCYTES_26
53.0
MONOCYTES_27
52.5
MONOCYTES_28
52.5
MONOCYTES_29
52.4
MONOCYTES_30
52.2
MONOCYTES_31
52.2
MONOCYTES_32
51.7
MONOCYTES_33
51.6
MONOCYTES_34
51.4
MONOCYTES_35
51.4
MONOCYTES_36
51.3
MONOCYTES_37
51.2
MONOCYTES_38
50.5
MONOCYTES_39
50.2
MONOCYTES_40
50.2
MONOCYTES_41
49.8
MONOCYTES_42
49.5
MONOCYTES_43
49.5
MONOCYTES_44
49.5
MONOCYTES_45
49.4
MONOCYTES_46
49.2
MONOCYTES_47
48.9
MONOCYTES_48
48.7
MONOCYTES_49
48.4
MONOCYTES_50
47.9
MONOCYTES_51
47.5
MONOCYTES_52
46.8
MONOCYTES_53
46.8
MONOCYTES_54
46.5
MONOCYTES_55
46.1
MONOCYTES_56
46.1
MONOCYTES_57
46.1
MONOCYTES_58
45.1
MONOCYTES_59
44.9
MONOCYTES_60
44.7
MONOCYTES_61
44.5
MONOCYTES_62
44.5
MONOCYTES_63
44.4
MONOCYTES_64
43.8
MONOCYTES_65
43.6
MONOCYTES_66
43.5
MONOCYTES_67
43.5
MONOCYTES_68
43.2
MONOCYTES_69
43.1
MONOCYTES_70
42.8
MONOCYTES_71
42.7
MONOCYTES_72
42.2
MONOCYTES_73
41.8
MONOCYTES_74
41.8
MONOCYTES_75
41.8
MONOCYTES_76
41.7
MONOCYTES_77
41.5
MONOCYTES_78
41.4
MONOCYTES_79
40.6
MONOCYTES_80
40.5
MONOCYTES_81
38.6
MONOCYTES_82
38.5
MONOCYTES_83
38.0
MONOCYTES_84
37.5
MONOCYTES_85
37.0
MONOCYTES_86
36.7
MONOCYTES_87
36.7
MONOCYTES_88
35.8
MONOCYTES_89
35.6
MONOCYTES_90
33.7
MONOCYTES_91
33.6
Show allShow less
Non-classical monocyte TPM: 18.3
Samples: 90
Max TPM: 40.5
Min TPM: 8.8
M2_1
40.5
M2_2
39.8
M2_3
29.9
M2_4
29.2
M2_5
28.5
M2_6
27.1
M2_7
26.8
M2_8
26.6
M2_9
25.9
M2_10
25.6
M2_11
24.7
M2_12
23.9
M2_13
23.8
M2_14
23.8
M2_15
23.7
M2_16
23.5
M2_17
23.4
M2_18
22.8
M2_19
22.2
M2_20
21.6
M2_21
21.6
M2_22
21.4
M2_23
21.2
M2_24
21.1
M2_25
20.9
M2_26
20.9
M2_27
20.7
M2_28
20.7
M2_29
20.7
M2_30
20.6
M2_31
19.9
M2_32
19.8
M2_33
19.5
M2_34
19.4
M2_35
18.9
M2_36
18.6
M2_37
18.6
M2_38
18.5
M2_39
18.5
M2_40
18.4
M2_41
18.4
M2_42
18.1
M2_43
17.6
M2_44
17.3
M2_45
17.3
M2_46
17.3
M2_47
17.3
M2_48
17.1
M2_49
16.9
M2_50
16.8
M2_51
16.5
M2_52
16.4
M2_53
16.3
M2_54
16.2
M2_55
16.1
M2_56
15.9
M2_57
15.6
M2_58
15.4
M2_59
15.2
M2_60
15.2
M2_61
15.2
M2_62
14.9
M2_63
14.9
M2_64
14.8
M2_65
14.7
M2_66
14.7
M2_67
14.6
M2_68
14.6
M2_69
14.4
M2_70
14.0
M2_71
13.9
M2_72
13.2
M2_73
13.2
M2_74
13.2
M2_75
13.0
M2_76
12.9
M2_77
12.9
M2_78
12.9
M2_79
12.8
M2_80
12.6
M2_81
12.3
M2_82
12.3
M2_83
12.0
M2_84
11.2
M2_85
11.1
M2_86
11.0
M2_87
10.9
M2_88
9.0
M2_89
9.0
M2_90
8.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
