HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:76.9 nTPM
HPA Brain:108.4 nTPM
GTEx:76.9 nTPM
FANTOM5:40.5 Scaled Tags Per Million
Pig:55.1 nTPM
Mouse:32.8 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA035305Antibody CAB010886
Glial cells LowNot detected
Neuronal cells LowMedium




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 108.4
Sample id Sample description nTPM
Hippocampus
nTPM: 75.1
1911 Female, age 85, right hemisphere 93.0
2529 Female, age 94, left hemisphere 84.3
2621 Female, age 67, right hemisphere 75.6
2148 Female, age 91, left hemisphere 69.3
1898 Male, age 80, left hemisphere 68.4
1855 Male, age 76, left hemisphere 60.3
Dentate gyrus
nTPM: 76.1
2530 Female, age 94, left hemisphere 109.6
2010 Male, age 76, both hemispheres 85.8
2528 Male, age 74, both hemispheres 85.8
2246 Female, age 85, both hemispheres 68.3
2531 Female, age 67, both hemispheres 55.5
1927 Female, age 91, both hemispheres 52.0
Entorhinal gyrus
nTPM: 81.1
2117 Female, age 91, right hemisphere 131.5
2764 Male, age 80, right hemisphere 99.2
1787 Male, age 76, left hemisphere 74.0
1938 Female, age 85, left hemisphere 70.2
2686 Male, age 75, right hemisphere 57.9
2613 Female, age 94, left hemisphere 53.6
Hippocampus, CA1
nTPM: 57.3
2527 Male, age 74, both hemispheres 75.4
1873 Female, age 85, both hemispheres 65.7
2082 Female, age 91, right hemisphere 63.4
2749 Male, age 80, left hemisphere 52.9
2045 Male, age 76, both hemispheres 29.3
Hippocampus, CA2
nTPM: 77.8
1963 Male, age 80, left hemisphere 103.2
2249 Male, age 74, both hemispheres 101.2
1940 Female, age 85, left hemisphere 78.2
2437 Female, age 94, left hemisphere 73.8
2113 Female, age 91, right hemisphere 66.5
1892 Male, age 76, both hemispheres 44.2
Hippocampus, CA3
nTPM: 67.2
2436 Male, age 74, both hemispheres 108.6
1891 Female, age 85, both hemispheres 100.4
1867 Male, age 76, both hemispheres 67.0
2861 Female, age 67, both hemispheres 46.3
2137 Male, age 80, left hemisphere 42.0
2620 Female, age 94, left hemisphere 38.6
Parahippocampal cortex
nTPM: 69.2
2532 Female, age 72, left hemisphere 95.6
2692 Male, age 74, both hemispheres 93.1
1990 Female, age 91, right hemisphere 81.8
2018 Male, age 76, both hemispheres 74.4
1933 Female, age 85, both hemispheres 72.5
1850 Male, age 80, both hemispheres 66.4
2245 Female, age 91, both hemispheres 62.4
2622 Female, age 67, right hemisphere 51.6
2693 Female, age 94, both hemispheres 47.6
2250 Female, age 67, right hemisphere 46.2
Perirhinal gyrus
nTPM: 46.6
1794 Male, age 80, right hemisphere 50.0
2521 Female, age 94, right hemisphere 48.6
2848 Male, age 76, right hemisphere 48.6
1841 Female, age 85, right hemisphere 46.3
1847 Female, age 91, left hemisphere 39.6
Subiculum
nTPM: 108.4
2042 Male, age 76, both hemispheres 154.0
1901 Male, age 80, both hemispheres 131.7
1977 Female, age 85, both hemispheres 103.7
2438 Female, age 94, left hemisphere 96.8
2619 Male, age 74, both hemispheres 86.7
2729 Female, age 91, right hemisphere 77.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 76.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 76.9
Samples: 255

Max nTPM: 352.0
Min nTPM: 8.1
Std nTPM: 53.8
Median nTPM: 64.4
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 352.0
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 328.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 278.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 250.3
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 237.6
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 228.6
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 219.8
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 209.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 206.9
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 201.8
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 193.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 40.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 40.5
FF:10153-102I9 76 years, female 56.1
FF:10169-103B7 60 years, female 24.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 55.1
Pig sample Sample description nTPM
Subiculum
nTPM: 42.2
Samples: 4

Max nTPM: 45.7
Min nTPM: 36.4
Sample A Female 42.3
Sample B Female 45.7
Sample C Male 36.4
Sample D Male 44.2
Dorsal hippocampus
nTPM: 55.1
Samples: 4

Max nTPM: 68.3
Min nTPM: 42.4
Sample A Female 68.3
Sample B Female 45.3
Sample C Male 64.2
Sample D Male 42.4
Entorhinal cortex
nTPM: 38.8
Samples: 4

Max nTPM: 46.2
Min nTPM: 34.5
Sample A Female 34.5
Sample B Female 46.2
Sample C Male 38.0
Sample D Male 36.6
Ventral hippocampus
nTPM: 46.0
Samples: 4

Max nTPM: 56.6
Min nTPM: 36.8
Sample A Female 41.9
Sample B Female 36.8
Sample C Male 48.6
Sample D Male 56.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 32.8
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.1
Samples: 4

Max nTPM: 31.6
Min nTPM: 20.0
Sample A Male 31.6
Sample B Male 24.1
Sample C Female 24.7
Sample D Female 20.0
Hippocampal formation
nTPM: 32.8
Samples: 4

Max nTPM: 38.5
Min nTPM: 26.1
Sample A Male 26.1
Sample B Male 34.6
Sample C Female 38.5
Sample D Female 32.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
100145368 Antisense, RP_110519_03_D04, Mouse strain C57BL/6J (56 days, male) 1.3
445 Antisense, RP_Baylor_102780, Mouse strain C57BL/6J (56 days, male) 0.1

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