A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.8
nTPM
Monaco:
24.2
nTPM
Schmiedel:
31.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.8
HPA sample
nTPM
NK-cell nTPM: 6.8
Samples: 6
Max nTPM: 16.9
Min nTPM: 0.5
P10809_1013
10.8
P10809_1033
3.4
P10809_1052
7.1
P10809_1071
2.2
P10809_1093
0.5
P10809_1103
16.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.2
Monaco sample
nTPM
NK-cell nTPM: 24.3
Samples: 4
Max nTPM: 38.2
Min nTPM: 8.4
RHH5316_R3683
27.3
RHH5224_R3596
38.2
RHH5253_R3625
23.1
RHH5282_R3654
8.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.5
Schmiedel sample id
TPM
NK-cell TPM: 31.5
Samples: 90
Max TPM: 40.1
Min TPM: 22.3
NK_1
40.1
NK_2
38.8
NK_3
38.8
NK_4
37.9
NK_5
37.7
NK_6
37.3
NK_7
37.1
NK_8
37.1
NK_9
36.6
NK_10
36.5
NK_11
36.3
NK_12
36.2
NK_13
35.9
NK_14
35.6
NK_15
34.9
NK_16
34.7
NK_17
34.6
NK_18
34.6
NK_19
34.6
NK_20
34.2
NK_21
34.1
NK_22
34.1
NK_23
33.9
NK_24
33.9
NK_25
33.9
NK_26
33.8
NK_27
33.7
NK_28
33.7
NK_29
33.4
NK_30
33.4
NK_31
33.2
NK_32
33.0
NK_33
32.7
NK_34
32.5
NK_35
32.3
NK_36
32.0
NK_37
32.0
NK_38
31.9
NK_39
31.7
NK_40
31.7
NK_41
31.6
NK_42
31.6
NK_43
31.6
NK_44
31.4
NK_45
31.3
NK_46
31.2
NK_47
31.2
NK_48
31.2
NK_49
31.1
NK_50
31.1
NK_51
31.0
NK_52
30.9
NK_53
30.9
NK_54
30.6
NK_55
30.3
NK_56
30.2
NK_57
30.2
NK_58
30.1
NK_59
29.8
NK_60
29.5
NK_61
29.4
NK_62
29.2
NK_63
29.1
NK_64
29.1
NK_65
29.0
NK_66
29.0
NK_67
28.9
NK_68
28.8
NK_69
28.7
NK_70
28.7
NK_71
28.7
NK_72
28.5
NK_73
28.2
NK_74
28.1
NK_75
28.1
NK_76
28.1
NK_77
27.9
NK_78
27.9
NK_79
27.5
NK_80
27.3
NK_81
27.0
NK_82
26.7
NK_83
26.5
NK_84
26.4
NK_85
26.3
NK_86
26.2
NK_87
25.9
NK_88
25.4
NK_89
24.8
NK_90
22.3
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