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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:351.7 nTPM
GTEx:351.7 nTPM
FANTOM5:538.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA029501Antibody CAB019421
Squamous epithelial cells MediumMedium





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

351.7
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 351.7
Samples: 170

Max nTPM: 1231.6
Min nTPM: 92.9
Std nTPM: 202.4
Median nTPM: 304.9
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1231.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 929.2
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 888.4
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 875.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 839.5
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 818.6
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 803.5
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 771.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 765.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 739.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 693.6
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 691.2
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 684.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 677.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 667.5
GTEX-S341-1226-SM-4AD5S 40-49 years, female 646.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 644.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 628.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 615.4
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 593.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 592.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 581.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 575.5
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 573.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 570.5
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 569.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 569.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 568.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 562.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 557.4
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 544.6
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 527.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 513.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 495.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 488.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 488.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 485.3
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 480.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 479.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 477.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 472.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 458.7
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 458.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 457.8
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 450.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 449.5
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 448.4
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 447.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 439.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 434.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 433.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 422.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 414.1
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 407.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 399.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 398.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 397.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 396.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 396.3
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 388.0
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 384.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 375.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 370.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 368.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 362.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 360.8
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 359.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 357.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 356.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 356.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 354.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 352.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 349.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 342.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 337.6
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 336.9
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 335.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 334.1
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 333.1
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 327.2
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 326.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 320.1
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 319.1
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 307.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 306.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 303.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 300.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 299.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 296.9
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 296.2
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 295.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 294.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 281.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 280.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 277.6
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 273.2
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 273.0
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 266.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 265.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 265.2
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 261.1
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 260.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 253.4
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 253.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 247.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 246.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 245.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 245.0
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 244.8
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 244.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 240.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 239.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 235.2
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 234.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 230.0
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 229.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 227.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 223.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 223.4
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 218.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 213.1
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 211.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 207.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 204.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 196.7
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 195.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 190.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 190.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 183.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 183.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 181.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 176.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 173.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 173.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 172.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 170.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 169.8
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 168.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 166.8
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 164.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 160.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 158.1
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 156.5
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 155.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 154.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 153.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 151.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 148.4
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 144.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 144.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 142.0
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 141.8
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 132.5
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 132.4
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 127.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 127.3
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 126.2
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 125.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 121.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 120.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 117.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 115.4
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 114.7
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 114.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 114.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 112.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 108.0
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 98.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 97.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 92.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

538.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 538.1
FF:10204-103F6 68 years, female 538.1

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