A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
30.4
nTPM
Monaco:
20.1
nTPM
Schmiedel:
51.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.4
HPA sample
nTPM
Classical monocyte nTPM: 22.7
Samples: 6
Max nTPM: 29.2
Min nTPM: 12.9
P10809_1003
12.9
P10809_1020
18.2
P10809_1039
29.2
P10809_1058
27.8
P10809_1080
23.7
P10809_1107
24.1
Intermediate monocyte nTPM: 24.5
Samples: 6
Max nTPM: 30.5
Min nTPM: 13.2
P10809_1004
13.2
P10809_1023
21.0
P10809_1042
30.5
P10809_1061
26.8
P10809_1081
27.1
P10809_1108
28.1
Non-classical monocyte nTPM: 30.4
Samples: 5
Max nTPM: 60.2
Min nTPM: 10.8
P10809_1005
10.8
P10809_1053
16.6
P10809_1072
60.2
P10809_1082
36.5
P10809_1109
27.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.1
Monaco sample
nTPM
Classical monocyte nTPM: 16.4
Samples: 4
Max nTPM: 22.4
Min nTPM: 10.0
RHH5313_R3680
22.4
RHH5221_R3593
13.9
RHH5250_R3622
10.0
RHH5279_R3651
19.4
Intermediate monocyte nTPM: 20.1
Samples: 4
Max nTPM: 33.0
Min nTPM: 12.3
RHH5314_R3681
21.9
RHH5222_R3594
33.0
RHH5251_R3623
13.3
RHH5280_R3652
12.3
Non-classical monocyte nTPM: 13.6
Samples: 4
Max nTPM: 16.3
Min nTPM: 10.6
RHH5315_R3682
12.7
RHH5223_R3595
14.6
RHH5252_R3624
10.6
RHH5281_R3653
16.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.2
Schmiedel sample id
TPM
Classical monocyte TPM: 31.7
Samples: 91
Max TPM: 44.2
Min TPM: 23.3
MONOCYTES_1
44.2
MONOCYTES_2
40.5
MONOCYTES_3
39.6
MONOCYTES_4
39.5
MONOCYTES_5
39.4
MONOCYTES_6
39.4
MONOCYTES_7
39.3
MONOCYTES_8
39.3
MONOCYTES_9
38.8
MONOCYTES_10
38.4
MONOCYTES_11
38.3
MONOCYTES_12
38.0
MONOCYTES_13
37.9
MONOCYTES_14
37.5
MONOCYTES_15
37.2
MONOCYTES_16
37.0
MONOCYTES_17
35.9
MONOCYTES_18
35.7
MONOCYTES_19
35.6
MONOCYTES_20
35.6
MONOCYTES_21
35.4
MONOCYTES_22
35.0
MONOCYTES_23
34.5
MONOCYTES_24
34.5
MONOCYTES_25
34.4
MONOCYTES_26
34.3
MONOCYTES_27
34.2
MONOCYTES_28
34.2
MONOCYTES_29
34.0
MONOCYTES_30
33.7
MONOCYTES_31
33.5
MONOCYTES_32
33.4
MONOCYTES_33
33.3
MONOCYTES_34
33.3
MONOCYTES_35
33.2
MONOCYTES_36
33.1
MONOCYTES_37
32.8
MONOCYTES_38
32.8
MONOCYTES_39
32.5
MONOCYTES_40
32.4
MONOCYTES_41
32.3
MONOCYTES_42
32.3
MONOCYTES_43
32.2
MONOCYTES_44
32.1
MONOCYTES_45
31.3
MONOCYTES_46
31.2
MONOCYTES_47
31.2
MONOCYTES_48
31.1
MONOCYTES_49
30.9
MONOCYTES_50
30.9
MONOCYTES_51
30.6
MONOCYTES_52
30.2
MONOCYTES_53
30.1
MONOCYTES_54
29.8
MONOCYTES_55
29.8
MONOCYTES_56
29.7
MONOCYTES_57
29.6
MONOCYTES_58
29.5
MONOCYTES_59
29.3
MONOCYTES_60
29.3
MONOCYTES_61
29.1
MONOCYTES_62
29.1
MONOCYTES_63
29.0
MONOCYTES_64
29.0
MONOCYTES_65
28.8
MONOCYTES_66
28.8
MONOCYTES_67
28.7
MONOCYTES_68
28.5
MONOCYTES_69
28.2
MONOCYTES_70
28.0
MONOCYTES_71
27.7
MONOCYTES_72
27.5
MONOCYTES_73
27.4
MONOCYTES_74
27.1
MONOCYTES_75
27.1
MONOCYTES_76
26.9
MONOCYTES_77
26.8
MONOCYTES_78
26.7
MONOCYTES_79
26.5
MONOCYTES_80
26.4
MONOCYTES_81
26.4
MONOCYTES_82
26.3
MONOCYTES_83
26.1
MONOCYTES_84
25.9
MONOCYTES_85
25.8
MONOCYTES_86
25.0
MONOCYTES_87
25.0
MONOCYTES_88
24.7
MONOCYTES_89
24.5
MONOCYTES_90
23.9
MONOCYTES_91
23.3
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Non-classical monocyte TPM: 51.2
Samples: 90
Max TPM: 71.3
Min TPM: 37.7
M2_1
71.3
M2_2
70.6
M2_3
70.0
M2_4
69.9
M2_5
69.3
M2_6
67.2
M2_7
65.6
M2_8
64.1
M2_9
63.9
M2_10
63.7
M2_11
63.0
M2_12
62.7
M2_13
61.9
M2_14
61.2
M2_15
59.4
M2_16
59.2
M2_17
59.1
M2_18
58.5
M2_19
57.2
M2_20
56.6
M2_21
56.3
M2_22
56.1
M2_23
55.5
M2_24
54.2
M2_25
54.0
M2_26
53.8
M2_27
53.0
M2_28
53.0
M2_29
52.7
M2_30
51.9
M2_31
51.8
M2_32
51.6
M2_33
51.4
M2_34
51.2
M2_35
50.8
M2_36
50.7
M2_37
50.6
M2_38
50.6
M2_39
50.6
M2_40
50.6
M2_41
50.6
M2_42
50.2
M2_43
50.2
M2_44
50.0
M2_45
49.7
M2_46
49.5
M2_47
48.9
M2_48
48.9
M2_49
48.9
M2_50
48.6
M2_51
48.6
M2_52
48.5
M2_53
48.3
M2_54
48.3
M2_55
48.3
M2_56
48.2
M2_57
48.1
M2_58
48.1
M2_59
48.0
M2_60
47.8
M2_61
47.6
M2_62
46.8
M2_63
46.8
M2_64
46.7
M2_65
46.7
M2_66
45.6
M2_67
45.6
M2_68
45.4
M2_69
45.2
M2_70
44.9
M2_71
44.6
M2_72
44.6
M2_73
44.6
M2_74
44.2
M2_75
44.2
M2_76
43.9
M2_77
43.9
M2_78
43.7
M2_79
42.9
M2_80
42.8
M2_81
42.5
M2_82
41.5
M2_83
41.0
M2_84
40.9
M2_85
40.6
M2_86
40.5
M2_87
40.3
M2_88
38.9
M2_89
38.6
M2_90
37.7
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