A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
25.8
nTPM
Monaco:
229.9
nTPM
Schmiedel:
47.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.8
HPA sample
nTPM
Classical monocyte nTPM: 17.0
Samples: 6
Max nTPM: 21.4
Min nTPM: 9.3
P10809_1003
20.2
P10809_1020
17.3
P10809_1039
9.3
P10809_1058
16.5
P10809_1080
21.4
P10809_1107
17.4
Intermediate monocyte nTPM: 24.3
Samples: 6
Max nTPM: 33.4
Min nTPM: 17.0
P10809_1004
33.4
P10809_1023
17.0
P10809_1042
25.8
P10809_1061
31.4
P10809_1081
18.4
P10809_1108
19.8
Non-classical monocyte nTPM: 25.8
Samples: 5
Max nTPM: 38.0
Min nTPM: 16.1
P10809_1005
25.3
P10809_1053
32.1
P10809_1072
38.0
P10809_1082
16.1
P10809_1109
17.6
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
229.9
Monaco sample
nTPM
Classical monocyte nTPM: 180.4
Samples: 4
Max nTPM: 243.7
Min nTPM: 147.8
RHH5313_R3680
162.2
RHH5221_R3593
243.7
RHH5250_R3622
147.8
RHH5279_R3651
167.8
Intermediate monocyte nTPM: 171.5
Samples: 4
Max nTPM: 197.9
Min nTPM: 148.1
RHH5314_R3681
148.1
RHH5222_R3594
197.9
RHH5251_R3623
178.0
RHH5280_R3652
162.0
Non-classical monocyte nTPM: 229.9
Samples: 4
Max nTPM: 269.8
Min nTPM: 208.9
RHH5315_R3682
223.2
RHH5223_R3595
269.8
RHH5252_R3624
217.7
RHH5281_R3653
208.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.8
Schmiedel sample id
TPM
Classical monocyte TPM: 33.3
Samples: 91
Max TPM: 45.2
Min TPM: 24.5
MONOCYTES_1
45.2
MONOCYTES_2
42.6
MONOCYTES_3
38.7
MONOCYTES_4
38.6
MONOCYTES_5
38.2
MONOCYTES_6
38.1
MONOCYTES_7
37.9
MONOCYTES_8
37.5
MONOCYTES_9
37.4
MONOCYTES_10
37.3
MONOCYTES_11
37.2
MONOCYTES_12
37.1
MONOCYTES_13
36.9
MONOCYTES_14
36.7
MONOCYTES_15
36.5
MONOCYTES_16
36.2
MONOCYTES_17
36.1
MONOCYTES_18
35.9
MONOCYTES_19
35.8
MONOCYTES_20
35.7
MONOCYTES_21
35.6
MONOCYTES_22
35.6
MONOCYTES_23
35.3
MONOCYTES_24
35.2
MONOCYTES_25
35.1
MONOCYTES_26
35.1
MONOCYTES_27
35.0
MONOCYTES_28
34.9
MONOCYTES_29
34.6
MONOCYTES_30
34.5
MONOCYTES_31
34.5
MONOCYTES_32
34.5
MONOCYTES_33
34.4
MONOCYTES_34
34.4
MONOCYTES_35
34.2
MONOCYTES_36
34.2
MONOCYTES_37
34.1
MONOCYTES_38
34.1
MONOCYTES_39
33.9
MONOCYTES_40
33.9
MONOCYTES_41
33.9
MONOCYTES_42
33.6
MONOCYTES_43
33.5
MONOCYTES_44
33.5
MONOCYTES_45
33.5
MONOCYTES_46
33.4
MONOCYTES_47
33.3
MONOCYTES_48
33.3
MONOCYTES_49
33.2
MONOCYTES_50
32.9
MONOCYTES_51
32.8
MONOCYTES_52
32.6
MONOCYTES_53
32.4
MONOCYTES_54
32.3
MONOCYTES_55
32.3
MONOCYTES_56
32.1
MONOCYTES_57
32.1
MONOCYTES_58
32.0
MONOCYTES_59
32.0
MONOCYTES_60
32.0
MONOCYTES_61
31.9
MONOCYTES_62
31.9
MONOCYTES_63
31.8
MONOCYTES_64
31.7
MONOCYTES_65
31.2
MONOCYTES_66
31.1
MONOCYTES_67
31.0
MONOCYTES_68
31.0
MONOCYTES_69
30.9
MONOCYTES_70
30.7
MONOCYTES_71
30.6
MONOCYTES_72
30.6
MONOCYTES_73
30.6
MONOCYTES_74
30.4
MONOCYTES_75
30.4
MONOCYTES_76
30.2
MONOCYTES_77
30.1
MONOCYTES_78
30.1
MONOCYTES_79
30.1
MONOCYTES_80
30.0
MONOCYTES_81
29.7
MONOCYTES_82
29.5
MONOCYTES_83
28.9
MONOCYTES_84
28.9
MONOCYTES_85
28.8
MONOCYTES_86
28.5
MONOCYTES_87
27.9
MONOCYTES_88
27.4
MONOCYTES_89
26.6
MONOCYTES_90
26.1
MONOCYTES_91
24.5
Show allShow less
Non-classical monocyte TPM: 47.8
Samples: 90
Max TPM: 56.8
Min TPM: 36.8
M2_1
56.8
M2_2
55.3
M2_3
54.2
M2_4
53.8
M2_5
52.5
M2_6
52.5
M2_7
52.4
M2_8
52.3
M2_9
52.2
M2_10
52.1
M2_11
51.8
M2_12
51.7
M2_13
51.5
M2_14
51.4
M2_15
51.3
M2_16
51.0
M2_17
50.9
M2_18
50.9
M2_19
50.8
M2_20
50.8
M2_21
50.5
M2_22
50.4
M2_23
50.3
M2_24
50.2
M2_25
49.9
M2_26
49.7
M2_27
49.6
M2_28
49.5
M2_29
49.4
M2_30
49.4
M2_31
49.3
M2_32
49.2
M2_33
49.2
M2_34
49.1
M2_35
49.1
M2_36
49.1
M2_37
49.0
M2_38
49.0
M2_39
49.0
M2_40
48.8
M2_41
48.6
M2_42
48.6
M2_43
48.5
M2_44
48.4
M2_45
48.4
M2_46
48.4
M2_47
47.8
M2_48
47.7
M2_49
47.6
M2_50
47.6
M2_51
47.5
M2_52
47.5
M2_53
47.3
M2_54
47.3
M2_55
47.2
M2_56
47.1
M2_57
46.9
M2_58
46.8
M2_59
46.8
M2_60
46.8
M2_61
46.7
M2_62
46.5
M2_63
45.8
M2_64
45.7
M2_65
45.5
M2_66
45.5
M2_67
45.5
M2_68
45.4
M2_69
45.0
M2_70
44.9
M2_71
44.9
M2_72
44.8
M2_73
44.8
M2_74
44.7
M2_75
44.3
M2_76
44.2
M2_77
44.1
M2_78
44.1
M2_79
43.9
M2_80
43.6
M2_81
43.5
M2_82
43.4
M2_83
43.3
M2_84
42.2
M2_85
41.7
M2_86
41.6
M2_87
41.1
M2_88
41.1
M2_89
40.5
M2_90
36.8
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
