A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
74.8
nTPM
Monaco:
105.0
nTPM
Schmiedel:
50.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
74.8
HPA sample
nTPM
Classical monocyte nTPM: 74.8
Samples: 6
Max nTPM: 153.8
Min nTPM: 46.6
P10809_1003
46.6
P10809_1020
53.9
P10809_1039
72.1
P10809_1058
52.5
P10809_1080
153.8
P10809_1107
69.7
Intermediate monocyte nTPM: 62.8
Samples: 6
Max nTPM: 91.7
Min nTPM: 32.4
P10809_1004
64.7
P10809_1023
53.4
P10809_1042
67.3
P10809_1061
32.4
P10809_1081
91.7
P10809_1108
67.4
Non-classical monocyte nTPM: 62.1
Samples: 5
Max nTPM: 92.3
Min nTPM: 46.5
P10809_1005
53.5
P10809_1053
46.5
P10809_1072
49.4
P10809_1082
92.3
P10809_1109
68.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.0
Monaco sample
nTPM
Classical monocyte nTPM: 105.0
Samples: 4
Max nTPM: 174.5
Min nTPM: 77.4
RHH5313_R3680
77.4
RHH5221_R3593
90.0
RHH5250_R3622
78.2
RHH5279_R3651
174.5
Intermediate monocyte nTPM: 91.4
Samples: 4
Max nTPM: 137.0
Min nTPM: 61.8
RHH5314_R3681
102.4
RHH5222_R3594
64.4
RHH5251_R3623
61.8
RHH5280_R3652
137.0
Non-classical monocyte nTPM: 71.8
Samples: 4
Max nTPM: 115.0
Min nTPM: 50.0
RHH5315_R3682
68.5
RHH5223_R3595
53.5
RHH5252_R3624
50.0
RHH5281_R3653
115.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
50.7
Schmiedel sample id
TPM
Classical monocyte TPM: 50.7
Samples: 91
Max TPM: 125.4
Min TPM: 20.4
MONOCYTES_1
125.4
MONOCYTES_2
120.1
MONOCYTES_3
105.2
MONOCYTES_4
103.3
MONOCYTES_5
89.4
MONOCYTES_6
88.8
MONOCYTES_7
83.5
MONOCYTES_8
77.8
MONOCYTES_9
74.3
MONOCYTES_10
73.2
MONOCYTES_11
73.0
MONOCYTES_12
70.9
MONOCYTES_13
70.5
MONOCYTES_14
69.0
MONOCYTES_15
68.1
MONOCYTES_16
64.9
MONOCYTES_17
64.4
MONOCYTES_18
64.1
MONOCYTES_19
61.1
MONOCYTES_20
60.8
MONOCYTES_21
59.8
MONOCYTES_22
57.3
MONOCYTES_23
57.1
MONOCYTES_24
56.7
MONOCYTES_25
56.6
MONOCYTES_26
55.9
MONOCYTES_27
55.7
MONOCYTES_28
53.9
MONOCYTES_29
53.9
MONOCYTES_30
53.8
MONOCYTES_31
53.1
MONOCYTES_32
52.9
MONOCYTES_33
52.5
MONOCYTES_34
51.3
MONOCYTES_35
51.3
MONOCYTES_36
51.0
MONOCYTES_37
50.8
MONOCYTES_38
50.7
MONOCYTES_39
50.6
MONOCYTES_40
50.4
MONOCYTES_41
50.0
MONOCYTES_42
49.8
MONOCYTES_43
49.7
MONOCYTES_44
49.7
MONOCYTES_45
49.7
MONOCYTES_46
48.9
MONOCYTES_47
48.5
MONOCYTES_48
48.5
MONOCYTES_49
48.3
MONOCYTES_50
48.1
MONOCYTES_51
47.9
MONOCYTES_52
47.5
MONOCYTES_53
46.7
MONOCYTES_54
46.3
MONOCYTES_55
45.9
MONOCYTES_56
45.5
MONOCYTES_57
44.5
MONOCYTES_58
44.2
MONOCYTES_59
42.3
MONOCYTES_60
40.6
MONOCYTES_61
40.5
MONOCYTES_62
40.4
MONOCYTES_63
39.9
MONOCYTES_64
39.2
MONOCYTES_65
39.1
MONOCYTES_66
38.5
MONOCYTES_67
37.3
MONOCYTES_68
37.3
MONOCYTES_69
37.0
MONOCYTES_70
35.9
MONOCYTES_71
35.6
MONOCYTES_72
35.3
MONOCYTES_73
34.4
MONOCYTES_74
33.3
MONOCYTES_75
33.0
MONOCYTES_76
31.7
MONOCYTES_77
31.7
MONOCYTES_78
31.5
MONOCYTES_79
31.1
MONOCYTES_80
31.1
MONOCYTES_81
28.7
MONOCYTES_82
28.3
MONOCYTES_83
28.0
MONOCYTES_84
27.2
MONOCYTES_85
27.2
MONOCYTES_86
25.7
MONOCYTES_87
25.6
MONOCYTES_88
23.5
MONOCYTES_89
21.7
MONOCYTES_90
20.8
MONOCYTES_91
20.4
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Non-classical monocyte TPM: 37.7
Samples: 90
Max TPM: 94.5
Min TPM: 7.2
M2_1
94.5
M2_2
85.3
M2_3
76.3
M2_4
76.0
M2_5
67.8
M2_6
66.7
M2_7
61.5
M2_8
61.0
M2_9
59.2
M2_10
58.5
M2_11
58.2
M2_12
57.7
M2_13
56.3
M2_14
54.5
M2_15
53.6
M2_16
53.2
M2_17
51.4
M2_18
49.2
M2_19
49.2
M2_20
48.9
M2_21
48.7
M2_22
48.5
M2_23
46.6
M2_24
46.0
M2_25
44.7
M2_26
44.0
M2_27
42.1
M2_28
42.1
M2_29
41.6
M2_30
41.0
M2_31
40.8
M2_32
40.4
M2_33
40.2
M2_34
39.8
M2_35
39.8
M2_36
39.7
M2_37
39.7
M2_38
39.6
M2_39
39.6
M2_40
39.5
M2_41
38.2
M2_42
38.0
M2_43
37.9
M2_44
37.3
M2_45
37.2
M2_46
37.0
M2_47
36.6
M2_48
36.3
M2_49
36.3
M2_50
35.9
M2_51
35.8
M2_52
35.3
M2_53
33.8
M2_54
33.6
M2_55
32.3
M2_56
32.0
M2_57
31.8
M2_58
31.5
M2_59
30.5
M2_60
30.4
M2_61
30.1
M2_62
29.1
M2_63
28.8
M2_64
28.7
M2_65
28.1
M2_66
27.7
M2_67
27.2
M2_68
26.1
M2_69
25.3
M2_70
24.9
M2_71
23.2
M2_72
22.0
M2_73
21.8
M2_74
21.3
M2_75
21.1
M2_76
20.0
M2_77
19.8
M2_78
18.5
M2_79
17.6
M2_80
17.5
M2_81
17.2
M2_82
16.9
M2_83
16.8
M2_84
15.7
M2_85
13.7
M2_86
13.5
M2_87
13.0
M2_88
12.3
M2_89
9.9
M2_90
7.2
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