A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.4
nTPM
Monaco:
9.6
nTPM
Schmiedel:
161.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.4
HPA sample
nTPM
NK-cell nTPM: 0.4
Samples: 6
Max nTPM: 1.2
Min nTPM: 0.0
P10809_1013
0.8
P10809_1033
1.2
P10809_1052
0.3
P10809_1071
0.0
P10809_1093
0.1
P10809_1103
0.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.6
Monaco sample
nTPM
NK-cell nTPM: 9.6
Samples: 4
Max nTPM: 15.4
Min nTPM: 2.2
RHH5316_R3683
15.4
RHH5224_R3596
2.2
RHH5253_R3625
9.0
RHH5282_R3654
11.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
161.3
Schmiedel sample id
TPM
NK-cell TPM: 161.3
Samples: 90
Max TPM: 362.0
Min TPM: 20.7
NK_1
362.0
NK_2
357.5
NK_3
340.3
NK_4
333.5
NK_5
325.7
NK_6
317.1
NK_7
299.9
NK_8
290.2
NK_9
283.1
NK_10
272.4
NK_11
270.6
NK_12
269.7
NK_13
267.6
NK_14
257.9
NK_15
251.9
NK_16
240.8
NK_17
239.6
NK_18
232.6
NK_19
229.2
NK_20
228.1
NK_21
211.0
NK_22
204.2
NK_23
200.1
NK_24
198.9
NK_25
194.9
NK_26
194.0
NK_27
193.7
NK_28
190.6
NK_29
186.2
NK_30
181.1
NK_31
178.7
NK_32
177.4
NK_33
177.2
NK_34
176.7
NK_35
176.0
NK_36
173.6
NK_37
169.1
NK_38
166.3
NK_39
165.3
NK_40
164.9
NK_41
162.0
NK_42
161.5
NK_43
159.1
NK_44
155.1
NK_45
150.1
NK_46
147.5
NK_47
146.0
NK_48
146.0
NK_49
145.1
NK_50
144.8
NK_51
144.4
NK_52
140.2
NK_53
138.6
NK_54
135.0
NK_55
126.0
NK_56
124.3
NK_57
121.6
NK_58
116.8
NK_59
116.7
NK_60
116.4
NK_61
116.3
NK_62
112.3
NK_63
112.2
NK_64
110.6
NK_65
109.6
NK_66
103.4
NK_67
101.8
NK_68
95.8
NK_69
93.7
NK_70
93.4
NK_71
93.0
NK_72
92.3
NK_73
90.3
NK_74
88.2
NK_75
83.5
NK_76
83.0
NK_77
81.8
NK_78
76.2
NK_79
75.0
NK_80
74.0
NK_81
63.9
NK_82
63.0
NK_83
59.3
NK_84
53.8
NK_85
51.8
NK_86
51.6
NK_87
51.1
NK_88
39.8
NK_89
29.8
NK_90
20.7
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